View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7965_low_32 (Length: 212)
Name: NF7965_low_32
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 53498819 - 53499004
Alignment:
| Q |
12 |
aacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtgagaatataagagcaacaacaggacaaca |
111 |
Q |
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| T |
53498819 |
aacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtgagaatataagagcaacaacaggacaaca |
53498918 |
T |
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| Q |
112 |
tagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttctt |
197 |
Q |
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| T |
53498919 |
tagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttctt |
53499004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 12 - 195
Target Start/End: Original strand, 53491223 - 53491408
Alignment:
| Q |
12 |
aacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtg--agaatataagagcaacaacaggacaa |
109 |
Q |
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| T |
53491223 |
aacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaa |
53491322 |
T |
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| Q |
110 |
catagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttc |
195 |
Q |
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| T |
53491323 |
catagataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttc |
53491408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 16069999 - 16070087
Alignment:
| Q |
106 |
acaacatagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatactt |
194 |
Q |
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| T |
16069999 |
acaacattaataacctgcttatttcctaaaccctttagcccaatttcaaccattaaagggacacctttcatttcccattcagaatactt |
16070087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 53516478 - 53516516
Alignment:
| Q |
151 |
tcaatccttagagggacgcctttcatttcccattcagaa |
189 |
Q |
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| T |
53516478 |
tcaatccttagagggacacctttcatttcccattcagaa |
53516516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 45355440 - 45355367
Alignment:
| Q |
118 |
acctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaata |
191 |
Q |
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| T |
45355440 |
acctgcttatttgctaaatccttgggcccgatttcaatccttagaggaacacctttcatttcccactgagaata |
45355367 |
T |
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