View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7965_low_4 (Length: 580)
Name: NF7965_low_4
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_low_4 |
 | |
|
| [»] scaffold0064 (2 HSPs) |
| | |
|
| [»] scaffold0128 (3 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Original strand, 7328126 - 7328651
Alignment:
| Q |
18 |
gtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtcttgga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328126 |
gtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtcttgga |
7328225 |
T |
|
| Q |
118 |
ctaaattctttacatttagctatcacaaccttcaagtgaatttaaattcaagatttgtttactcgtggttgaaattaaaggcattgcatctttctgaaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328226 |
ctaaattctttacatttagctatcacaaccttcaagtgaatttaaattcaagatttgtttactcgtggttgaaattaaaggcattgcatctttctgaaga |
7328325 |
T |
|
| Q |
218 |
tggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactggaatctagagttaacaaaaagata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7328326 |
tggtgatacaatcgtattcgcaagctgcctgcataaccaagcaattctctataacttgagaactaatagagtactggaatctagagttaacaaaaagata |
7328425 |
T |
|
| Q |
318 |
tgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttctccaacataatatttatttcaatttatgtacttagt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328426 |
tgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaaagtaagtttttctccaacataatatttatttcaatttatgtacttagt |
7328525 |
T |
|
| Q |
418 |
tttgccttcgtttcaaatgtgtgagtatttgctttactttagaactttgtcatagatatggtgaatcaaccgactgatccgaatacgtgttcagaactca |
517 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7328526 |
tttgccttcgttt---atgtgtgagtatttgctttactttagaactttgtcatagatatggtgaatcaaccgactgatccgaatacgtgttcagaactca |
7328622 |
T |
|
| Q |
518 |
gttctctatatatactctatgaagcacga |
546 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7328623 |
gttctctatatatactctatgaagcacga |
7328651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 531
Target Start/End: Complemental strand, 7311332 - 7310817
Alignment:
| Q |
18 |
gtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtcttgga |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
7311332 |
gtttgtgtgttgatgaactccttctgcttttctcaagatttcaacggaacagattttgttatatggaagatgacagaatttggagacgaccggtcttgga |
7311233 |
T |
|
| Q |
118 |
ctaaattctttacatttagctatcacaaccttcaagtgaatttaaattcaagatttgtttactcgtggttgaaattaaaggcattgcatctttctgaaga |
217 |
Q |
| |
|
|| | || |||||||||||||||||||| |||| | ||||||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||| |
|
|
| T |
7311232 |
ctcagttatttacatttagctatcacaatcttcgaatgaatttaaattcaagagttgtttactcgaggttgaaattaaagccgttgcatctttctgaaga |
7311133 |
T |
|
| Q |
218 |
tggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactggaatctagagttaacaaaaagata |
317 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
7311132 |
tggtgatacaatagtattcggaagctgcctagataaccaagcaattctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagata |
7311033 |
T |
|
| Q |
318 |
tgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttctccaacataatatttatttcaatttatgtac---tt |
414 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| || |||||||||||||||||| ||||||||| || |
|
|
| T |
7311032 |
tgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttttctaacataatatttatttcagtttatgtacttgtt |
7310933 |
T |
|
| Q |
415 |
agttttgccttcgtttcaaatgtgtgagtatttgctttactttagaactttgtcatagatatggtgaatcaaccgactgatccgaatacgtgttcagaac |
514 |
Q |
| |
|
|||| || ||||| | ||| ||| ||||| |||||||||| ||||||||| ||| ||||||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
7310932 |
tttttttactaggtttcgattgtatgattatttcctttactttaaaactttgtcgtag-tatggtgaatcaaccgaaggatccgaatacctgtttagaac |
7310834 |
T |
|
| Q |
515 |
tcagttctctatatata |
531 |
Q |
| |
|
|||||| | |||||||| |
|
|
| T |
7310833 |
tcagttatatatatata |
7310817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 195 - 531
Target Start/End: Complemental strand, 7306603 - 7306267
Alignment:
| Q |
195 |
aaggcattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactgg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
7306603 |
aaggcattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctagataaccaagcaattctgtataacttgagaactaatagagtactga |
7306504 |
T |
|
| Q |
295 |
aatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttctccaacataatat |
394 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
7306503 |
aatctagagtcaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtctcaacctattgaacgtaggtttttctccaacataatat |
7306404 |
T |
|
| Q |
395 |
ttatttcaatttatgtacttagttttgccttcgtttcaaatgtgtgagtatttgctttactttagaactttgtcatagatatggtgaatcaaccgactga |
494 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||||| |||| || ||||| |||||||||| ||||||| ||||||||||||||||||| | || || |
|
|
| T |
7306403 |
ttatttcaatttatgtacttggtttttacttggtttcaattgtgcgattatttcctttactttaaaactttgccatagatatggtgaatcaatcaacgga |
7306304 |
T |
|
| Q |
495 |
tccgaatacgtgttcagaactcagttctctatatata |
531 |
Q |
| |
|
||||||||| | || ||||||| ||| |||||||||| |
|
|
| T |
7306303 |
tccgaatacctttttagaactccgttatctatatata |
7306267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 35206045 - 35205919
Alignment:
| Q |
19 |
tttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtcttggac |
118 |
Q |
| |
|
|||||||| ||| ||||||||| || |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
35206045 |
tttgtgtgctgaggaactccttttgtttttatcatgatttcaatggaactgattttgttatatggaagatgacagaatttggaaatgacaagtcttggac |
35205946 |
T |
|
| Q |
119 |
taaattctttacatttagctatcacaa |
145 |
Q |
| |
|
| ||||| ||| ||||||||||||||| |
|
|
| T |
35205945 |
tcaattccttaaatttagctatcacaa |
35205919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 186 - 383
Target Start/End: Complemental strand, 35205863 - 35205658
Alignment:
| Q |
186 |
ttgaaattaaaggcattgcatctttctgaagatggtgatacaatcgtattcgca---agctgcctacataaccaagcaatt-----ctctataacttgag |
277 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||||||||| ||||||||||| | | |||| | |||||| |||| |||||||||| ||| |
|
|
| T |
35205863 |
ttgatattaatgccattgcatctttctgaggatggtgatacactcgtattcgcagcaaacaacctaaaacaccaagtaattatattctctataactggag |
35205764 |
T |
|
| Q |
278 |
aactaatagactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtt |
377 |
Q |
| |
|
||| |||||| ||||| ||||| | ||||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
35205763 |
aaccaatagagtactgaaatcttcaattaacaataagatatgttggttcactatcaaggattatgtcgaaagcctggtttcaactagttgaatgtaagtt |
35205664 |
T |
|
| Q |
378 |
tttctc |
383 |
Q |
| |
|
||||| |
|
|
| T |
35205663 |
gttctc |
35205658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 21210598 - 21210476
Alignment:
| Q |
23 |
tgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtcttggactaaa |
122 |
Q |
| |
|
|||||| | ||||| ||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||| |||||||||| | |
|
|
| T |
21210598 |
tgtgtttaggaacttcttatgcctttatcatgatttcaacggaactgattttgttatatggaagatgacaaagtttggagatgacaagtcttggactcta |
21210499 |
T |
|
| Q |
123 |
ttctttacatttagctatcacaa |
145 |
Q |
| |
|
||| ||| ||||||||||||||| |
|
|
| T |
21210498 |
ttccttaaatttagctatcacaa |
21210476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 199 - 361
Target Start/End: Original strand, 20414999 - 20415161
Alignment:
| Q |
199 |
cattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactggaatc |
298 |
Q |
| |
|
|||||||||||| || ||||||||||| | |||||||||| | ||||||| ||| ||||||||||||||| | ||||| ||||| | || || || | |
|
|
| T |
20414999 |
cattgcatcttttcaaaaatggtgatacacttgtattcgcaaacagcctacaagaccgagcaattctctataattggagaaataatatagtattgaaacc |
20415098 |
T |
|
| Q |
299 |
tagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaac |
361 |
Q |
| |
|
||||||||||| || | |||||||| ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
20415099 |
cagagttaacaataacaaatgttggttctctatcaactgttatgttgaaagtctggtttcaac |
20415161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 21218830 - 21218709
Alignment:
| Q |
18 |
gtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtcttgga |
117 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||| |||||||| ||| ||||| ||||||||| | ||||| |||||||||||||| | |||||||| |
|
|
| T |
21218830 |
gtttgtgtgttgatgaactccttttgtttttatcacgatttcaatggaactgatttggttatatggcaaatgacggaatttggagatgataagtcttgga |
21218731 |
T |
|
| Q |
118 |
ctaaattctttacatttagcta |
139 |
Q |
| |
|
|| ||||| | | ||||||||| |
|
|
| T |
21218730 |
ctcaattcctcaaatttagcta |
21218709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 360
Target Start/End: Complemental strand, 21210420 - 21210247
Alignment:
| Q |
186 |
ttgaaattaaaggcattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaata |
285 |
Q |
| |
|
|||||||||||| | |||||||||||||| || ||||||||| ||||||| || | ||| || ||||||||| |||| |||||||| |||| ||||| |
|
|
| T |
21210420 |
ttgaaattaaagccggtgcatctttctgaaaatattgatacaatagtattcgtaaacaacctgcaaaaccaagcagttctatataacttcagaaataata |
21210321 |
T |
|
| Q |
286 |
gactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaa |
360 |
Q |
| |
|
| ||||| |||| | | ||||| | |||||| |||||| || || | |||||||||||| |||||||||||||| |
|
|
| T |
21210320 |
cagtactgaaatccaaaattaaccataagatacgttggttctgtaccgaggattatgtcg-aagtctggtttcaa |
21210247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 20414827 - 20414971
Alignment:
| Q |
18 |
gtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaa---aacagattttgttatatggaagatgacagaatttggagatgacaggtctt |
114 |
Q |
| |
|
||||||||||| ||||||||||| || |||| |||| || | | ||| ||| |||||| ||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
20414827 |
gtttgtgtgttcatgaactccttttgtttttatcataatatgatcaacggaaccgattttattatatggaagatgatgaaatttggagatgacaagtctt |
20414926 |
T |
|
| Q |
115 |
ggactaaattctttacatttagctatcacaaccttcaagtgaatt |
159 |
Q |
| |
|
||||| ||||| ||| ||||| | || | ||||||| |||||||| |
|
|
| T |
20414927 |
ggactcaattccttaaatttaacaatgataaccttcgagtgaatt |
20414971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 13888164 - 13888093
Alignment:
| Q |
70 |
attttgttatatggaagatgacagaatttggagatgacaggtcttggactaaattctttacatttagctatc |
141 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| || | |||||||||| ||||| ||| ||||||||||| |
|
|
| T |
13888164 |
attttgttatatggaaaatgacaaaatttggagacgaaaagtcttggactcaattccttaaatttagctatc |
13888093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 20456450 - 20456552
Alignment:
| Q |
18 |
gtttgtgtgttgatgaactccttatgcttttctcatgatt---tcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtctt |
114 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||| | ||||| ||| ||||||||||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
20456450 |
gtttgtgtgttgatgaactccttttgtttttatcataacacgatcaacggaaccaattttgttatatggaagatgacaaaatttggggatgacaagtctt |
20456549 |
T |
|
| Q |
115 |
gga |
117 |
Q |
| |
|
||| |
|
|
| T |
20456550 |
gga |
20456552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 36260225 - 36260285
Alignment:
| Q |
42 |
tgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggag |
102 |
Q |
| |
|
||||||||| |||||| ||| ||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
36260225 |
tgcttttctaatgattacaagaaaactgattttgttatatggaagatggaagaatttggag |
36260285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 36263025 - 36263123
Alignment:
| Q |
42 |
tgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtcttggactaaattctttacatttagctat |
140 |
Q |
| |
|
||||||||| |||| | || ||||| ||||||||||||||||||||| ||||||||||| ||| |||||||||| || || ||| | |||||||| |
|
|
| T |
36263025 |
tgcttttctaatgactataagaaaactgattttgttatatggaagatggaagaatttggagttgaagagtcttggactcaactcattaaagttagctat |
36263123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 524
Target Start/End: Complemental strand, 35205575 - 35205498
Alignment:
| Q |
448 |
gctttactttagaactttgtcatagatatggtgaatcaaccgactgatccgaata-cgtgttcagaactcagttctct |
524 |
Q |
| |
|
||||||||| | |||||||||||||||||| | ||||||||| | |||| |||| | |||| ||||||||||||||| |
|
|
| T |
35205575 |
gctttacttcaaaactttgtcatagatatgctaaatcaaccggcccatccaaataccatgtttagaactcagttctct |
35205498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 382
Target Start/End: Complemental strand, 21218553 - 21218469
Alignment:
| Q |
298 |
ctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttct |
382 |
Q |
| |
|
||||| |||||||||||||| |||||| ||| || | |||||||||||||| |||||||||| | |||| ||||||| |||| |
|
|
| T |
21218553 |
ctagaattaacaaaaagataagttggtcctcagtctatgattatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct |
21218469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 258 - 383
Target Start/End: Complemental strand, 31442874 - 31442749
Alignment:
| Q |
258 |
gcaattctctataacttgagaactaatagactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggttt |
357 |
Q |
| |
|
|||||||||||||| | ||||| ||||||| || || || ||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||| |
|
|
| T |
31442874 |
gcaattctctataattggagaaataatagagtagtgaaaactagagttaacaaaaagatatgttggttctctataaaccattatgtcgaaagcttggttt |
31442775 |
T |
|
| Q |
358 |
caacctgctgaatgtaagtttttctc |
383 |
Q |
| |
|
|||| | |||| ||||||| ||||| |
|
|
| T |
31442774 |
caacaagttgaaagtaagttcttctc |
31442749 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 31443061 - 31443005
Alignment:
| Q |
50 |
tcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatga |
106 |
Q |
| |
|
||||||||| || |||| ||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
31443061 |
tcatgatttgaatgaaaccgatttcgttatatggaagatgacaaaatttggagatga |
31443005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 24206 - 24292
Alignment:
| Q |
71 |
ttttgttatatggaagatgacagaatttggagatgacaggtcttggactaaattctttacatttagctatcacaaccttcaagtgaa |
157 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | |||||| ||| ||||| ||| ||||||||||||| | |||||| |||| |
|
|
| T |
24206 |
ttttgttatatggaagatgacagaatatggagatgaaaagtcttgaactcaattccttaaatttagctatcacgatcttcaaatgaa |
24292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 383
Target Start/End: Original strand, 24360 - 24491
Alignment:
| Q |
252 |
aaccaagcaattctctataacttgagaactaatagactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtc |
351 |
Q |
| |
|
|||| ||||||||||||||| | || || ||||||| || || || |||| |||||||||||||||||||||| ||||| || ||||||| ||||| |
|
|
| T |
24360 |
aaccgagcaattctctataattggataaataatagagtagtgaaaactagggttaacaaaaagatatgttggtgatctataaacaattatgttgaaagca |
24459 |
T |
|
| Q |
352 |
tggtttcaacctgctgaatgtaagtttttctc |
383 |
Q |
| |
|
||||| |||| || ||| ||||||| ||||| |
|
|
| T |
24460 |
tggttccaacttgttgagagtaagttcttctc |
24491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 4117 - 4192
Alignment:
| Q |
50 |
tcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtcttggactaaattc |
125 |
Q |
| |
|
|||||||||||| || || ||||| ||||||||||||||||||||||||||| |||| | ||||||||| ||||| |
|
|
| T |
4117 |
tcatgatttcaagaagaccgatttggttatatggaagatgacagaatttggaaatgaaaattcttggactcaattc |
4192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 25566 - 25690
Alignment:
| Q |
18 |
gtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtcttgga |
117 |
Q |
| |
|
||||||||||||||||||||| |||| ||| ||| ||||| || |||| ||||||||||||||||| ||| ||||||||| ||| | ||||||| |
|
|
| T |
25566 |
gtttgtgtgttgatgaactccctatgtgtttatcacgatttaaaggaaactgattttgttatatggaaattgatggaatttggaaatgtaaattcttgga |
25665 |
T |
|
| Q |
118 |
ctaaattctttacatttagctatca |
142 |
Q |
| |
|
| ||||| ||| ||||| |||||| |
|
|
| T |
25666 |
cccaattccttaaatttacctatca |
25690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 8517 - 8642
Alignment:
| Q |
18 |
gtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtcttgga |
117 |
Q |
| |
|
||||||||||| ||||||||| |||| ||| ||| ||||| || |||| ||||||||||||||||| ||| ||||||||| |||| | ||||||| |
|
|
| T |
8517 |
gtttgtgtgttaatgaactccctatgtgtttatcaagatttaaaggaaactgattttgttatatggaaattgatggaatttggaaatgaaaattcttgga |
8616 |
T |
|
| Q |
118 |
ctaaattctttacatttagctatcac |
143 |
Q |
| |
|
||||| || ||||||||||||| |
|
|
| T |
8617 |
tccaattccttcgatttagctatcac |
8642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 42298091 - 42298166
Alignment:
| Q |
50 |
tcatgatttcaacaaaacagattttgttatatggaagatgacagaatttggagatgacaggtcttggactaaattc |
125 |
Q |
| |
|
|||| ||||||| || || ||||| |||||||||||||||| ||||||||||||||| | ||||||||| ||||| |
|
|
| T |
42298091 |
tcataatttcaagaatactgatttagttatatggaagatgatagaatttggagatgaaaattcttggactcaattc |
42298166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 42298342 - 42298420
Alignment:
| Q |
304 |
ttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttct |
382 |
Q |
| |
|
|||||| |||||||||||||| ||| || || |||||||||||||| |||||||||| | |||| ||||||| |||| |
|
|
| T |
42298342 |
ttaacagaaagatatgttggtcctcaatgaaagattatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct |
42298420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 20980603 - 20980669
Alignment:
| Q |
69 |
gattttgttatatggaagatgacagaatttggagatgacaggtcttggactaaattctttacattta |
135 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| ||| |||||||||||| ||| ||| ||||| |
|
|
| T |
20980603 |
gattttgttatatggaaaatgacagaatttagagttgaagagtcttggactaagttccttaaattta |
20980669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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