View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7965_low_5 (Length: 548)
Name: NF7965_low_5
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_low_5 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 6 - 531
Target Start/End: Original strand, 21272185 - 21272711
Alignment:
| Q |
6 |
ctttggtggtacagctagtttctaaatcaacatccaatccccctcgacttccagagctccattttccactaattctgttagacagaacttataggctgag |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
21272185 |
ctttggtggtacagctagtttctaaatcaacatccaatccccctcgacttccagagctccatttttcactaattctgttagacagaacttataggctgag |
21272284 |
T |
|
| Q |
106 |
cggacactctaaactccacgtgtatctggtctccatattcgctcatcatgtgcaacagaattaaataacggtgtgtttagagcatcaaacagtgaatgtg |
205 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21272285 |
cggacactctaaactccatgcgtatccggtctccatattcgctcatcatgtgcaactgaattaaataacggtgtgtttagagcatcaaacagtgaatgtg |
21272384 |
T |
|
| Q |
206 |
agcttaaataatgctgcaacacatccaagttccatgatttctgtccaggctgaagcagttccttcgtattaagttgcagcagctgattgcattgc-aaac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
21272385 |
agcttaaataatgctgcaacacatccaatttccatgatttctgcccaggctgaagcagttccttcgtattaagttgcagcagctgattgcattgcaaaac |
21272484 |
T |
|
| Q |
305 |
aggctgtgctaaactgctgtttacgagccacctatcttgaaaaatcccggattttatctccattaccaattgtccactgtgttccttgcttaaccatggg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
21272485 |
aggctgtgctaaactgctgtttacgagccacctatcttgaaaaatcccggattttatctccattaccaatcgtccactgtgttccttgcttaaccatggg |
21272584 |
T |
|
| Q |
405 |
tatagcctcgtgaatactcttccacacataactcgaattgtgtcctttctttgcttcaaaaatatcattcctcggataataccaggctttaaaaagtctc |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
21272585 |
tatagcctcgtgaatactcttccacacataactggaattgtgtcctttctttgcttcaaaaatataattcctcggataataccaggctttaaaaagtctc |
21272684 |
T |
|
| Q |
505 |
gctactaataactccggttgagacatt |
531 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
21272685 |
gctactaataactccggttgagacatt |
21272711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 6 - 531
Target Start/End: Original strand, 6955903 - 6956428
Alignment:
| Q |
6 |
ctttggtggtacagctagtttctaaatcaacatccaatccccctcgacttccagagctccattttccactaattctgttagacagaacttataggctgag |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||||||| ||||| || ||||||| |||| |||||||||||| ||| |||| | |||| |
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|
| T |
6955903 |
ctttggtggtacagctagtttccaaatcgaaatccaatccccctcgacctccagccctacattttctactagttctgttagacaaaacctatatgttgag |
6956002 |
T |
|
| Q |
106 |
cggacactctaaactccacgtgtatctggtctccatattcgctcatcatgtgcaacagaattaaataacggtgtgtttagagcatcaaacagtgaatgtg |
205 |
Q |
| |
|
|| | | ||| |||||| ||||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||| | ||| ||| ||| || |||| |
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|
| T |
6956003 |
cgagcggtgtaagttccacgcttatctggcctccatactcgctcatcatgtgcaatagaattaaataacggagtgttcatagcctcacacatcgactgtg |
6956102 |
T |
|
| Q |
206 |
agcttaaataatgctgcaacacatccaagttccatgatttctgtccaggctgaagcagttccttcgtattaagttgcagcagctgattgcattgcaaac- |
304 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||||| || || || |||||||||| ||| ||| |||||||||||||| ||||||| | ||| | |
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|
| T |
6956103 |
gacttaaataatgttgcagcacatccaaattccatgacttttgacccggctgaagcaattcgttcacattaagttgcagcaactgattgtactgcgcagt |
6956202 |
T |
|
| Q |
305 |
aggctgtgctaaactgctgtttacgagccacctatcttgaaaaatcccggattttatctccattaccaattgtccactgtgttccttgcttaaccatggg |
404 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||||||| |||| |||||||||| |||||||| ||||| |||||||||||| |||||||| |
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|
| T |
6956203 |
aggctgtgctaaactgccattcatgagccacctatcttgaaaaa-cccgaattttatctctgttaccaatcttccaccttgttccttgcttgaccatggg |
6956301 |
T |
|
| Q |
405 |
tatagcctcgtgaatactcttccacacataactcgaattgtgtcctttctttgcttcaaaaatatcattcctcggataataccaggctttaaaaagtctc |
504 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| | |||| | |||||||||||||| |
|
|
| T |
6956302 |
tatagcctcatgaatactcttccacacataacttgaattgtttcctttctttgcctcaaaaatatcattccttcggtaatgtcgtgctttaaaaagtctt |
6956401 |
T |
|
| Q |
505 |
gctactaataactccggttgagacatt |
531 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
6956402 |
gctactaataactctggttgagacatt |
6956428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 73 - 531
Target Start/End: Original strand, 22009402 - 22009861
Alignment:
| Q |
73 |
actaattctgttagacagaacttataggctgagcggacactctaaactccacgtgtatctggtctccatattcgctcatcatgtgcaacagaattaaata |
172 |
Q |
| |
|
|||| |||||||||||| ||| || ||||||||||||| | |||| |||||| || |||| ||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
22009402 |
actagttctgttagacaaaacctagaggctgagcggacggtgtaaattccacgcttacctggcctccatactcgctcatcatatgcagtagaattaaata |
22009501 |
T |
|
| Q |
173 |
acggtgtgtttagagcatcaaacagtgaatgtgagcttaaataatgctgcaacacatccaagttccatgatttctgtccaggctgaagcagttccttcgt |
272 |
Q |
| |
|
|| | ||||| | ||| ||||||| || ||||| ||||||||||| |||| ||||||||| ||||| || || || ||||||||||||| ||||||| |
|
|
| T |
22009502 |
acagagtgttcatagcctcaaacaccgactgtgaacttaaataatgttgcagcacatccaaattccacgacttttgaccaggctgaagcaattccttcac |
22009601 |
T |
|
| Q |
273 |
attaagttgcagcagctgattgcattgcaaa-caggctgtgctaaactgctgtttacgagccacctatcttgaaaaatcccggattttatctccattacc |
371 |
Q |
| |
|
|||||||||||||| | ||||| | | | | ||||||||||||||| || ||| |||||||||||||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
22009602 |
attaagttgcagcaaccgattgtactacgcagcaggctgtgctaaaccgccgttcacgagccacctatcttgaaaaa-cccgaattttatctccgttacc |
22009700 |
T |
|
| Q |
372 |
aattgtccactgtgttccttgcttaaccatgggtatagcctcgtgaatactcttccacacataactcgaattgtgtcctttctttgcttcaaaaatatca |
471 |
Q |
| |
|
|| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||| ||||||||| || |
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|
| T |
22009701 |
gatcttccaccttgttccttgcttgaccatgggtatagcctcatgaatactcttccacacataacttaaattgtttcctttatttgcctcaaaaatagca |
22009800 |
T |
|
| Q |
472 |
ttcctcggataataccaggc-tttaaaaagtctcgctactaataactccggttgagacatt |
531 |
Q |
| |
|
||||| ||||||||| || |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22009801 |
ttccttcgataataccgtgcttttaaaaagtcttgctactaataactccggttgagacatt |
22009861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 6 - 531
Target Start/End: Original strand, 6751185 - 6751705
Alignment:
| Q |
6 |
ctttggtggtacagctagtttctaaatcaacatccaatccccctcgacttccagagctccattttccactaattctgttagacagaacttataggctgag |
105 |
Q |
| |
|
|||||| |||||| ||||||| ||||| ||||| | |||||||| || ||||| | |||||| |||| |||||||||||| ||| ||||||||||| |
|
|
| T |
6751185 |
ctttggcggtacaactagttttcaaatcgacatctagtccccctcaacctccagccttggattttctactagttctgttagacaaaacctataggctgag |
6751284 |
T |
|
| Q |
106 |
cggacactctaaactccacgtgtatctggtctccatattcgctcatcatgtgcaacagaattaaataacggtgtgtttagagcatcaaacagtgaatgtg |
205 |
Q |
| |
|
| ||| | |||| |||||| ||||||| || |||| ||||||||||||||||| |||||||||||||| || ||| ||| ||| |||||||| |
|
|
| T |
6751285 |
cagacggtgtaaattccacgcttatctggccttcatactcgctcatcatgtgcaatagaattaaataacg-----ttcctagcctcacacactgaatgtg |
6751379 |
T |
|
| Q |
206 |
agcttaaataatgctgcaacacatccaagttccatgatttctgtccaggctgaagcagttccttcgtattaagttgcagcagctgattgcattgcaaa-c |
304 |
Q |
| |
|
|||||||||| |||| ||||||||| | |||||| || || ||||| ||||||| ||||||| |||||||||||||| ||||||| | ||| | | |
|
|
| T |
6751380 |
gagttaaataatgttgcagcacatccaaatcccatgacttttgaccaggttgaagcaattccttcacattaagttgcagcaactgattgtactgcgcagc |
6751479 |
T |
|
| Q |
305 |
aggctgtgctaaactgctgtttacgagccacctatcttgaaaaatcccggattttatctccattaccaattgtccactgtgttccttgcttaaccatggg |
404 |
Q |
| |
|
|||||||||||||| || || | |||||||||||||||||||| | || ||||||||| |||||||| ||||| |||||||||||| |||||||| |
|
|
| T |
6751480 |
aggctgtgctaaaccgccattcatgagccacctatcttgaaaaa-ctcgaattttatctttcttaccaatcttccaccttgttccttgcttgaccatggg |
6751578 |
T |
|
| Q |
405 |
tatagcctcgtgaatactcttccacacataactcgaattgtgtcctttctttgcttcaaaaatatcattcctcggataataccaggctttaaaaagtctc |
504 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||||||||| | ||||| | |||||||||||||| |
|
|
| T |
6751579 |
tatagcctcatgaatactcttccacacataacttgaattatttcctttctttgcctcaaaaatatcattcctttggtaatatcgtgctttaaaaagtctt |
6751678 |
T |
|
| Q |
505 |
gctactaataactccggttgagacatt |
531 |
Q |
| |
|
|||| |||||||||||||||| ||||| |
|
|
| T |
6751679 |
gctattaataactccggttgacacatt |
6751705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 6 - 531
Target Start/End: Complemental strand, 6467344 - 6466821
Alignment:
| Q |
6 |
ctttggtggtacagctagtttctaaatcaacatccaatccccctcgacttccagagctccattttccactaattctgttagacagaacttataggctgag |
105 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||| | |||||||| || ||||| | |||||| |||| || || |||||| ||| ||||||||||| |
|
|
| T |
6467344 |
ctttggtggtacaactagtttccaaatcgacatctagtccccctcaacctccagccttggattttctactagttttg-tagacaaaacctataggctgag |
6467246 |
T |
|
| Q |
106 |
cggacactctaaactccacgtgtatctggtctccatattcgctcatcatgtgcaacagaattaaataacggtgtgtttagagcatcaaacagtgaatgtg |
205 |
Q |
| |
|
|||| | |||| |||||| ||||||| || |||| ||||||||||||||||| ||||||||||||||| ||||| | ||| ||| ||| |||||| |
|
|
| T |
6467245 |
cggatggtgtaaattccacgcttatctggccttcatactcgctcatcatgtgcaatagaattaaataacggagtgttcatagcctcacacaccgaatgta |
6467146 |
T |
|
| Q |
206 |
agcttaaataatgctgcaacacatccaagttccatgatttctgtccaggctgaagcagttccttcgtattaagttgcagcagctgattgcattgc-aaac |
304 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||||| || | || || |||||| ||||||| ||||||||| |||| ||||||| | ||| | | |
|
|
| T |
6467145 |
gacttaaataatgttgcagcacatccaaattccatgactttttaccgggtggaagcaattccttcacattaagttgtagcaactgattgtactgcgcagc |
6467046 |
T |
|
| Q |
305 |
aggctgtgctaaactgctgtttacgagccacctatcttgaaaaatcccggattttatctccattaccaattgtccactgtgttccttgcttaaccatggg |
404 |
Q |
| |
|
||||| |||||||| || || | |||||||||||||||||||| | | ||||||||||| |||||||| ||||| |||||||||||| |||||||| |
|
|
| T |
6467045 |
aggctctgctaaaccgccattcatgagccacctatcttgaaaaa-ctcaaattttatctcccttaccaatcttccaccttgttccttgcttgaccatggg |
6466947 |
T |
|
| Q |
405 |
tatagcctcgtgaatactcttccacacataactcgaattgtgtcctttctttgcttcaaaaatatcattcctcggataataccaggctttaaaaagtctc |
504 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| | ||||||| |||| ||||||||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
6466946 |
tatagcctcatgaatactcttccacacataacttgaattatttcctttc-ttgcctcaaaaatatcattccttcggtaataccgtgctttaaaaagtctt |
6466848 |
T |
|
| Q |
505 |
gctactaataactccggttgagacatt |
531 |
Q |
| |
|
||||||| ||||||||||||| ||||| |
|
|
| T |
6466847 |
gctactagtaactccggttgacacatt |
6466821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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