View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7965_low_9 (Length: 439)
Name: NF7965_low_9
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_low_9 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 144 - 378
Target Start/End: Complemental strand, 21371747 - 21371510
Alignment:
| Q |
144 |
acatgcctgacacgacacaaacacatgtgattacatttatctatgtcannnnnnnnaaaatcattacaagtgtctacgtgttccatcgaatcactagctt |
243 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21371747 |
acatgactgacacaacacaaacacatgtgattacatttatttatgtcatttttttaaaaatcattacaagtgtctacgtgttccatcgaatcactagctt |
21371648 |
T |
|
| Q |
244 |
caattccttcacaaaaacacaacatcactaaa--tct-caatcacattcatcaaatttggaattacaaaaccgaaaatcatcatctcggagatcgaagag |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21371647 |
caattccttcacaaaaacacaacatcactaaaattcttcaatcacattcatcaaatttggaattacaaaaccgaaaatcatcatctcggagatcgaagag |
21371548 |
T |
|
| Q |
341 |
cgtgaatatacctgagattagtaggttgatctggaaac |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21371547 |
cgtgaatatacctgagattagtaggttgatctggaaac |
21371510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 21371973 - 21371796
Alignment:
| Q |
9 |
tattattctcagtagcaccaacacttctgatcgtaggtgtgtccaatgtctgacacatatagttacgtttaattatgacattctctcgaaaatgcattat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
21371973 |
tattattctcagtagcaccaacacttctgatcgtaggtgtgtccaatgtctgacacatatagttacgtttaattatgccattttctcaaaaatgcattat |
21371874 |
T |
|
| Q |
109 |
caatgtgccagtgtaagtatcaattttcggacatcacatgcctgacacgacacaaacacatgtgattacatttatctatgtca |
191 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21371873 |
caatgtgccagtgtaagtatcaatgttcgg-----acatgcctgacacgacacaaacacatgtgattacatttaattatgtca |
21371796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 7840176 - 7840138
Alignment:
| Q |
21 |
tagcaccaacacttctgatcgtaggtgtgtccaatgtct |
59 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
7840176 |
tagcaccaacacttctgatcgaaggtgtatccaatgtct |
7840138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 28486756 - 28486794
Alignment:
| Q |
20 |
gtagcaccaacacttctgatcgtaggtgtgtccaatgtc |
58 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
28486756 |
gtagcaccaacacttctgatcgaaggtgtgtccagtgtc |
28486794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 29799169 - 29799207
Alignment:
| Q |
20 |
gtagcaccaacacttctgatcgtaggtgtgtccaatgtc |
58 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
29799169 |
gtagcaccaacacttctgatcgaaggtgtgtccagtgtc |
29799207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 104577 - 104529
Alignment:
| Q |
16 |
ctcagtagcaccaacacttctgatcgtaggtgtgtccaatgtctgacac |
64 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
104577 |
ctcaatagcactaacacttctgatcgaaggtgtgtccgatgtcggacac |
104529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 51939175 - 51939147
Alignment:
| Q |
152 |
gacacgacacaaacacatgtgattacatt |
180 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
51939175 |
gacacgacacaaacacatgtgattacatt |
51939147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 264669 - 264637
Alignment:
| Q |
150 |
ctgacacgacacaaacacatgtgattacattta |
182 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
264669 |
ctgacacgacaccaacacatgtgattacattta |
264637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University