View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7966_high_10 (Length: 470)
Name: NF7966_high_10
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_high_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 137 - 454
Target Start/End: Original strand, 13895236 - 13895554
Alignment:
| Q |
137 |
ggtcttagcaatccggagttgtcagggaggaagtgacatatagtttcaaa-atgagacatgctatctaaattctcttttgaacatactcttcaaatcgat |
235 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||||| |||||| |||||| |||||| ||||| |||||||||||||||||||||||| ||| |
|
|
| T |
13895236 |
ggtcttagtaatccgtagttgtccacgaggaagtgacatatagcttcaaacatgagatatgctagttaaatgctcttttgaacatactcttcaaattgat |
13895335 |
T |
|
| Q |
236 |
ctttgaaatatttaagcaaattctatagtaaaataaccaaaaagcaacggacnnnnnnncacaggtaattcttatatattgacggcatattcggatttac |
335 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| |||||| |||||| || |||||| |||||||| || |||| ||||||||||||| ||| |
|
|
| T |
13895336 |
ctttgaaatatttaagcaaattttatggtaaaatgaccaaatagcaaccgataaaaaaacacagggaattcttacatgttgatggcatattcggatgtac |
13895435 |
T |
|
| Q |
336 |
aacagtttcactgtagcagccaatgtttggccactacagccggtcaaaaacacaatgccatcagttctgttgtagcaactaaacacattaaaaccatatg |
435 |
Q |
| |
|
||||||||||| |||||||||| | |||| ||||||||||||||| |||||||||||| ||||| |||||||||| |||||| ||| | ||||||||||| |
|
|
| T |
13895436 |
aacagtttcaccgtagcagccactatttgtccactacagccggtcgaaaacacaatgcaatcaggtctgttgtagtaactaagcacgtcaaaaccatatg |
13895535 |
T |
|
| Q |
436 |
acgtcctttattccctttc |
454 |
Q |
| |
|
|| | || ||||| ||||| |
|
|
| T |
13895536 |
acattctctattctctttc |
13895554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 13864338 - 13864435
Alignment:
| Q |
19 |
gttcagtggtttagatttactacagaaagcacttgtataatttg--acttggatggtagcgtataaactttcgacgtacttcaatggagaaactaaaa |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13864338 |
gttcagtggtttagatttaccacagaaagcacttatatcatttgtgacttggatggtaaggtataaactttcgacgtacttcaatggagaaactaaaa |
13864435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 13877002 - 13877099
Alignment:
| Q |
19 |
gttcagtggtttagatttactacagaaagcacttgtataatttg--acttggatggtagcgtataaactttcgacgtacttcaatggagaaactaaaa |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13877002 |
gttcagtggtttagatttaccacagaaagcacttatatcatttgtgacttggatggtaaggtataaactttcgacgtacttcaatggagaaactaaaa |
13877099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 13864586 - 13864648
Alignment:
| Q |
295 |
cacaggtaattcttatatattgacggcatattcggatttacaacagtttcactgtagcagcca |
357 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13864586 |
cacagggaattcttatatgttgatggcatattcggatttacaacagtttcaccgtagcagcca |
13864648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 454
Target Start/End: Original strand, 13864643 - 13864725
Alignment:
| Q |
372 |
cagccggtcaaaaacacaatgccatcagttctgttgtagcaactaaacacattaaaaccatatgacgtcctttattccctttc |
454 |
Q |
| |
|
||||| |||||||| |||| || ||| | |||| |||||||||||| ||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
13864643 |
cagccagtcaaaaatacaaggcaatcgggtctgctgtagcaactaagcacgttaaacccatatgacgtcctctattccctttc |
13864725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 13877304 - 13877366
Alignment:
| Q |
137 |
ggtcttagcaatccggagttgtcagggaggaagtgacatatagtttcaaa-atgagacatgcta |
199 |
Q |
| |
|
|||||||| |||| |||||| || |||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
13877304 |
ggtcttagtaatc-ggagttttctgggaggaagtgacatatagtttcaaatatgagatatgcta |
13877366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University