View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_high_11 (Length: 463)
Name: NF7966_high_11
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Original strand, 21085829 - 21086264
Alignment:
| Q |
17 |
agataggaaccatatggaagaaattgaaggattgtgatgataatggcattgtagtagtgaatactaaacagaggactctgcttgaaatgcagggtagggg |
116 |
Q |
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| T |
21085829 |
agataggaaccatatggaagaaattaaaggattgtgatgataatggcattgtagtagtgaatactaaacagaggactctgcttgaaatgcagggtagggg |
21085928 |
T |
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| Q |
117 |
tagaggataagagaggt--tagttgattcatgttagagtatggctacacagttggatatatagaaggattttgtggccctacattaccnnnnnnnggtga |
214 |
Q |
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| T |
21085929 |
tagaggataagagaggttatagttgattcatgttagagtatggctacacagttggatatatagaaggattttgtggccctacattacc-aaaaaaggtga |
21086027 |
T |
|
| Q |
215 |
taagttagttgattgtggagttacacacttggacaactttatcacattgnnnnnnnncct-tttgttaaacattcggtttttaaggattctgataattac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| || ||||||||||||| |
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| T |
21086028 |
taagttagttgattgtggagttacacacttggacaactttatcacattgtttttttttttctttgttaaaca-tcggttttctagagttctgataattac |
21086126 |
T |
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| Q |
314 |
gagtttcgtcacgaggtaagtaaattctgataatagatcgttacatttaagaaaggctctcccaaatgattatccataattagaactcattaacaatttg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21086127 |
gagtttcgtcacgaggtaagtaaattctgataatagatcgttacattcaagaaaggctctcccaaatgattatccataattagaactcattaacaatttg |
21086226 |
T |
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| Q |
414 |
aattcaatttcaatttaggtaatcttattcgagatatt |
451 |
Q |
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| T |
21086227 |
aattcaatttcagtttagataatcttattcgagatatt |
21086264 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 2484680 - 2484643
Alignment:
| Q |
132 |
gttagttgattcatgttagagtatggctacacagttgg |
169 |
Q |
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| T |
2484680 |
gttagttgattcatgttagaatatggctacaaagttgg |
2484643 |
T |
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