View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7966_high_12 (Length: 455)
Name: NF7966_high_12
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 445
Target Start/End: Original strand, 21085829 - 21086258
Alignment:
| Q |
17 |
agataggaaccatatggaagaaattgaaggattgtgatgataatggcattgtagtagtgaatactaaacagaggactctgcttgaaatgcagggtagggg |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21085829 |
agataggaaccatatggaagaaattaaaggattgtgatgataatggcattgtagtagtgaatactaaacagaggactctgcttgaaatgcagggtagggg |
21085928 |
T |
|
| Q |
117 |
tagaggataagagaggt--tagttgattcatgttagagtatggctacacagttggatatatagaaggattttgtggccctacattaccnnnnnnnggtga |
214 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21085929 |
tagaggataagagaggttatagttgattcatgttagagtatggctacacagttggatatatagaaggattttgtggccctacattacc-aaaaaaggtga |
21086027 |
T |
|
| Q |
215 |
taagttagttgattgtggagttacacacttggacaactttatcacattgnnnnnnnncct-tttgttaaacattcggtttttaaggattctgataattac |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
21086028 |
taagttagttgattgtggagttacacacttggacaactttatcacattgtttttttttttctttgttaaaca-tcggttttctagagttctgataattac |
21086126 |
T |
|
| Q |
314 |
gagtttcgtcacgaggtaagtaaattctgataatagatcgttacatttaagaaaggctctcccaaatgattatccataattagaactcattaacaatttg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21086127 |
gagtttcgtcacgaggtaagtaaattctgataatagatcgttacattcaagaaaggctctcccaaatgattatccataattagaactcattaacaatttg |
21086226 |
T |
|
| Q |
414 |
aattcaatttcaatttaggtaatattcttcga |
445 |
Q |
| |
|
|||||||||||| ||||| |||| || ||||| |
|
|
| T |
21086227 |
aattcaatttcagtttagataatcttattcga |
21086258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 2484680 - 2484643
Alignment:
| Q |
132 |
gttagttgattcatgttagagtatggctacacagttgg |
169 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
2484680 |
gttagttgattcatgttagaatatggctacaaagttgg |
2484643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University