View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_high_14 (Length: 444)
Name: NF7966_high_14
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 47231647 - 47231989
Alignment:
| Q |
18 |
ataagcagcaattgcatgcaattagggaaatgattccctcacacaagactaaacataacagaggacacaaatataaaaccaatccaaatgtagcctttta |
117 |
Q |
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| T |
47231647 |
ataagcagcaattgcatgcaattagggaaatgattccctcacacaagactaaacataacagaggacacaaatataaaaccaatccaaatgtaacctttta |
47231746 |
T |
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| Q |
118 |
caattaaaaatgaatgtacgagtttcttttttcagtgagcaatgtcaaagaatgtgtcccaaagctacagacagtttagtactccgtaattaagatcaaa |
217 |
Q |
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| T |
47231747 |
caattaaaaatgaatgtacgagtttcttttttcagtgagcaatgtcaaagaatgtgtcccaaagctacagacagtttagtactccgtaattaagatcaaa |
47231846 |
T |
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| Q |
218 |
agaaagattctctctgaataacagccactcactgcctgaaaacgttgacccagcctaatagcttcctttgagtctagctaatataacacggcacaatatt |
317 |
Q |
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| T |
47231847 |
agaaagattctctctgaataacagc----cactgcctgaaaacgttgacccagcctaatagcttcctttgagtctagctaatataacacggcacaatatt |
47231942 |
T |
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| Q |
318 |
tgccatgatgattcacaaacttcttaaggccaacgtaaattttcaaa |
364 |
Q |
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| T |
47231943 |
tgccatgatgattcacaaacttcttaaggccaacgtaaattttcaaa |
47231989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 430
Target Start/End: Original strand, 47231989 - 47232028
Alignment:
| Q |
391 |
aaagaggagaaaatagaatggtttgattcaatttacatat |
430 |
Q |
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| T |
47231989 |
aaagaggagaaaatagaatggtttgattcaatttacatat |
47232028 |
T |
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