View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7966_high_21 (Length: 397)

Name: NF7966_high_21
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7966_high_21
NF7966_high_21
[»] chr2 (7 HSPs)
chr2 (1-272)||(39363890-39364167)
chr2 (164-213)||(39362537-39362586)
chr2 (279-342)||(39364539-39364602)
chr2 (279-330)||(44068775-44068826)
chr2 (296-330)||(410032-410066)
chr2 (279-329)||(25626590-25626640)
chr2 (296-333)||(27414043-27414080)
[»] chr3 (4 HSPs)
chr3 (296-339)||(37387475-37387518)
chr3 (284-327)||(47006718-47006761)
chr3 (296-330)||(45054770-45054804)
chr3 (282-330)||(33791599-33791647)
[»] chr6 (2 HSPs)
chr6 (282-332)||(3787548-3787598)
chr6 (296-332)||(11109058-11109094)
[»] chr8 (2 HSPs)
chr8 (291-340)||(8114287-8114336)
chr8 (296-337)||(8867315-8867356)
[»] chr4 (2 HSPs)
chr4 (282-326)||(29508784-29508828)
chr4 (296-330)||(22019523-22019557)
[»] chr1 (3 HSPs)
chr1 (285-337)||(32543862-32543914)
chr1 (296-329)||(943232-943265)
chr1 (282-323)||(1780461-1780502)
[»] chr7 (8 HSPs)
chr7 (279-330)||(26080966-26081017)
chr7 (279-330)||(26104753-26104804)
chr7 (296-330)||(20884451-20884485)
chr7 (296-330)||(25119873-25119907)
chr7 (296-330)||(38652632-38652666)
chr7 (293-330)||(24393618-24393655)
chr7 (282-330)||(28337324-28337372)
chr7 (282-330)||(32786910-32786958)
[»] chr5 (1 HSPs)
chr5 (285-336)||(12289123-12289174)
[»] scaffold0097 (1 HSPs)
scaffold0097 (296-328)||(46827-46859)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 39363890 - 39364167
Alignment:
Q  1 ttggagaaataagaaaggatgaatgaatttcagatatacgaagaagcagtgttccatatgaattctggtctttccagagttatcagacatggtactaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39363890 ttggagaaataagaaaggatgaatgaatttcagatatacgaagaagcagtgttccatatgaattctggtctttccagagttatcggacatggtactaatt 39363989  T
Q  101 tagccttatcaatgctaataaagcatgtgttaaaaatcaaaactaatttcttcgtactagttaattttcttattgtgttgtggcttgcaggaagaggaga 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39363990 tagccttatcaatgctaataaagcatgtgttcaaaatcaaaactaatttcttcgtactagttaattttcttattgtgttgtggcttgcaggaagaggaga 39364089  T
Q  201 taaatc----atatggctactacaacacctttatcttttc--tagtacttgcttttaatttatgtttgagggtagtgt 272  Q
    ||||||    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  39364090 taaatcatatatatggctactacaacacctttatcttttctatagtacttgcttttaatttatgtttgagggtagtgt 39364167  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 39362537 - 39362586
Alignment:
Q  164 attttcttattgtgttgtggcttgcaggaagaggagataaatcatatggc 213  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  39362537 attttcttcttgtgttgtgacttgcaggaagaggagataaaccatatggc 39362586  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 39364539 - 39364602
Alignment:
Q  279 tgttctttttggattcattaacatgtacccttagggcacaagttaacatgactctaaaagataa 342  Q
    |||| ||||||| |||||||||| || |||||| |||| ||||||||||||| |||||||||||    
T  39364539 tgttatttttgggttcattaacacgtgcccttatggcataagttaacatgaccctaaaagataa 39364602  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 44068826 - 44068775
Alignment:
Q  279 tgttctttttggattcattaacatgtacccttagggcacaagttaacatgac 330  Q
    ||||| |||| ||||| ||||||||| |||||||||||||||||||||||||    
T  44068826 tgttcattttagattccttaacatgtgcccttagggcacaagttaacatgac 44068775  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 410032 - 410066
Alignment:
Q  296 ttaacatgtacccttagggcacaagttaacatgac 330  Q
    ||||||||| |||||||||||||||||||||||||    
T  410032 ttaacatgtgcccttagggcacaagttaacatgac 410066  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 25626590 - 25626640
Alignment:
Q  279 tgttctttttggattcattaacatgtacccttagggcacaagttaacatga 329  Q
    ||||| |||| | ||| ||||||||| ||||||||||||||||||||||||    
T  25626590 tgttcattttaggttccttaacatgtgcccttagggcacaagttaacatga 25626640  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 27414080 - 27414043
Alignment:
Q  296 ttaacatgtacccttagggcacaagttaacatgactct 333  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  27414080 ttaacatgtgccctaagggcacaagttaacatgactct 27414043  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 37387475 - 37387518
Alignment:
Q  296 ttaacatgtacccttagggcacaagttaacatgactctaaaaga 339  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||    
T  37387475 ttaacatgtgcccttagggcacaagttaacatgaccctaaaaga 37387518  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 47006718 - 47006761
Alignment:
Q  284 tttttggattcattaacatgtacccttagggcacaagttaacat 327  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||    
T  47006718 tttttgggttccttaacatgtacccttagggcacaagttaacat 47006761  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 45054770 - 45054804
Alignment:
Q  296 ttaacatgtacccttagggcacaagttaacatgac 330  Q
    ||||||||| |||||||||||||||||||||||||    
T  45054770 ttaacatgtgcccttagggcacaagttaacatgac 45054804  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 33791599 - 33791647
Alignment:
Q  282 tctttttggattcattaacatgtacccttagggcacaagttaacatgac 330  Q
    ||||||| ||||| ||||||| | || ||||||||||||||||||||||    
T  33791599 tctttttcgattctttaacatatgcctttagggcacaagttaacatgac 33791647  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 3787548 - 3787598
Alignment:
Q  282 tctttttggattcattaacatgtacccttagggcacaagttaacatgactc 332  Q
    |||||||| |||||||||||||| |||||||| || |||||||||||||||    
T  3787548 tctttttgaattcattaacatgtgcccttaggacataagttaacatgactc 3787598  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 11109094 - 11109058
Alignment:
Q  296 ttaacatgtacccttagggcacaagttaacatgactc 332  Q
    |||||||||  ||||||||||||||||||||||||||    
T  11109094 ttaacatgtgtccttagggcacaagttaacatgactc 11109058  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 8114336 - 8114287
Alignment:
Q  291 attcattaacatgtacccttagggcacaagttaacatgactctaaaagat 340  Q
    |||| ||||||||| ||||||||||||||||||||||||| || ||||||    
T  8114336 attccttaacatgtgcccttagggcacaagttaacatgacccttaaagat 8114287  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 8867315 - 8867356
Alignment:
Q  296 ttaacatgtacccttagggcacaagttaacatgactctaaaa 337  Q
    ||||||||| || ||||||||||||||| |||||||||||||    
T  8867315 ttaacatgtgccattagggcacaagttagcatgactctaaaa 8867356  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 29508784 - 29508828
Alignment:
Q  282 tctttttggattcattaacatgtacccttagggcacaagttaaca 326  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||    
T  29508784 tctttttgggttccttaacatgtgcccttagggcacaagttaaca 29508828  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 22019523 - 22019557
Alignment:
Q  296 ttaacatgtacccttagggcacaagttaacatgac 330  Q
    ||||||||| |||||||||||||||||||||||||    
T  22019523 ttaacatgtgcccttagggcacaagttaacatgac 22019557  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 32543914 - 32543862
Alignment:
Q  285 ttttggattcattaacatgtacccttagggcacaagttaacatgactctaaaa 337  Q
    |||||||||  ||||||||| || ||| |||||||||||||||||||||||||    
T  32543914 ttttggattgtttaacatgtgccattatggcacaagttaacatgactctaaaa 32543862  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 943232 - 943265
Alignment:
Q  296 ttaacatgtacccttagggcacaagttaacatga 329  Q
    |||||||||||||| |||||||||||||||||||    
T  943232 ttaacatgtaccctgagggcacaagttaacatga 943265  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 1780502 - 1780461
Alignment:
Q  282 tctttttggattcattaacatgtacccttagggcacaagtta 323  Q
    |||||||||| || |||||||| |||||||||||||||||||    
T  1780502 tctttttggaatccttaacatgcacccttagggcacaagtta 1780461  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 26081017 - 26080966
Alignment:
Q  279 tgttctttttggattcattaacatgtacccttagggcacaagttaacatgac 330  Q
    |||||||||||| ||| ||||||||| ||||||| |||| ||||||||||||    
T  26081017 tgttctttttgggttccttaacatgtgcccttagagcacgagttaacatgac 26080966  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 26104804 - 26104753
Alignment:
Q  279 tgttctttttggattcattaacatgtacccttagggcacaagttaacatgac 330  Q
    |||||||||||| ||| ||||||||| ||||||| |||| ||||||||||||    
T  26104804 tgttctttttgggttccttaacatgtgcccttagagcacgagttaacatgac 26104753  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 330
Target Start/End: Complemental strand, 20884485 - 20884451
Alignment:
Q  296 ttaacatgtacccttagggcacaagttaacatgac 330  Q
    |||||||||||||| ||||||||||||||||||||    
T  20884485 ttaacatgtaccctaagggcacaagttaacatgac 20884451  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 25119873 - 25119907
Alignment:
Q  296 ttaacatgtacccttagggcacaagttaacatgac 330  Q
    ||||||||| |||||||||||||||||||||||||    
T  25119873 ttaacatgtgcccttagggcacaagttaacatgac 25119907  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 330
Target Start/End: Complemental strand, 38652666 - 38652632
Alignment:
Q  296 ttaacatgtacccttagggcacaagttaacatgac 330  Q
    |||||||||||||| ||||||||||||||||||||    
T  38652666 ttaacatgtaccctaagggcacaagttaacatgac 38652632  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 24393618 - 24393655
Alignment:
Q  293 tcattaacatgtacccttagggcacaagttaacatgac 330  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  24393618 tcattaacttgtaccctaagggcacaagttaacatgac 24393655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 28337324 - 28337372
Alignment:
Q  282 tctttttggattcattaacatgtacccttagggcacaagttaacatgac 330  Q
    ||||||| ||||| |||||||||||| |||||||| || ||||||||||    
T  28337324 tctttttagattccttaacatgtacctttagggcataatttaacatgac 28337372  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 32786910 - 32786958
Alignment:
Q  282 tctttttggattcattaacatgtacccttagggcacaagttaacatgac 330  Q
    |||||| || ||| ||||||||| |||||||||||||||||| ||||||    
T  32786910 tcttttcgggttccttaacatgtgcccttagggcacaagttagcatgac 32786958  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 12289123 - 12289174
Alignment:
Q  285 ttttggattcattaacatgtacccttagggcacaagttaacatgactctaaa 336  Q
    |||||||||  ||||||||| ||||||||||||||||||| ||||| |||||    
T  12289123 ttttggattgcttaacatgtgcccttagggcacaagttaatatgaccctaaa 12289174  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 46859 - 46827
Alignment:
Q  296 ttaacatgtacccttagggcacaagttaacatg 328  Q
    ||||| |||||||||||||||||||||||||||    
T  46859 ttaacttgtacccttagggcacaagttaacatg 46827  T

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