View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7966_high_28 (Length: 330)

Name: NF7966_high_28
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7966_high_28
NF7966_high_28
[»] chr1 (23 HSPs)
chr1 (15-314)||(24185428-24185729)
chr1 (100-314)||(5509703-5509920)
chr1 (175-312)||(47559475-47559613)
chr1 (117-312)||(5209545-5209743)
chr1 (238-312)||(28945807-28945882)
chr1 (238-312)||(36296734-36296809)
chr1 (238-312)||(42722269-42722344)
chr1 (198-311)||(9023255-9023371)
chr1 (20-295)||(41665661-41665937)
chr1 (175-251)||(47397449-47397528)
chr1 (264-314)||(49229351-49229402)
chr1 (214-296)||(12027845-12027929)
chr1 (262-314)||(23664120-23664173)
chr1 (264-314)||(25095204-25095255)
chr1 (100-198)||(44310545-44310643)
chr1 (238-312)||(26221716-26221790)
chr1 (265-314)||(5049494-5049544)
chr1 (265-314)||(17967339-17967389)
chr1 (265-314)||(21906418-21906468)
chr1 (265-314)||(27430805-27430855)
chr1 (265-314)||(34307461-34307511)
chr1 (265-314)||(48596367-48596417)
chr1 (267-312)||(12783987-12784032)
[»] chr5 (26 HSPs)
chr5 (82-314)||(8806149-8806383)
chr5 (78-314)||(38915541-38915779)
chr5 (102-314)||(3654711-3654925)
chr5 (20-314)||(29789584-29789880)
chr5 (100-314)||(13820714-13820934)
chr5 (132-314)||(13826095-13826285)
chr5 (81-224)||(23151538-23151681)
chr5 (137-304)||(5121073-5121245)
chr5 (132-314)||(16040070-16040251)
chr5 (132-280)||(20891274-20891424)
chr5 (132-289)||(43171284-43171443)
chr5 (152-314)||(37134767-37134932)
chr5 (202-302)||(6769315-6769415)
chr5 (78-169)||(23318486-23318577)
chr5 (238-312)||(38491078-38491153)
chr5 (238-312)||(7850346-7850421)
chr5 (184-275)||(23319703-23319797)
chr5 (262-314)||(5578620-5578673)
chr5 (262-314)||(9409564-9409617)
chr5 (262-314)||(42879634-42879687)
chr5 (106-194)||(29150502-29150590)
chr5 (184-296)||(14651669-14651783)
chr5 (256-295)||(32698816-32698855)
chr5 (265-314)||(13382615-13382665)
chr5 (265-314)||(23962889-23962939)
chr5 (262-314)||(13490429-13490482)
[»] chr3 (23 HSPs)
chr3 (80-312)||(30190997-30191232)
chr3 (100-314)||(29713845-29714058)
chr3 (116-314)||(1424734-1424933)
chr3 (116-312)||(47185006-47185205)
chr3 (100-314)||(12893089-12893307)
chr3 (88-314)||(10992911-10993137)
chr3 (144-314)||(11639884-11640057)
chr3 (71-188)||(11830309-11830426)
chr3 (117-309)||(3917989-3918190)
chr3 (202-302)||(16876826-16876928)
chr3 (132-314)||(53472160-53472346)
chr3 (190-314)||(1698458-1698585)
chr3 (197-302)||(40145515-40145622)
chr3 (238-312)||(23044884-23044959)
chr3 (238-312)||(31884944-31885019)
chr3 (265-314)||(10994164-10994214)
chr3 (238-312)||(6024753-6024828)
chr3 (265-314)||(27941531-27941581)
chr3 (100-182)||(44663188-44663270)
chr3 (263-314)||(15760898-15760950)
chr3 (264-314)||(44663338-44663389)
chr3 (265-306)||(19157140-19157182)
chr3 (265-314)||(53076983-53077033)
[»] chr8 (21 HSPs)
chr8 (100-314)||(11648602-11648818)
chr8 (108-314)||(24190205-24190410)
chr8 (175-314)||(28374488-28374629)
chr8 (177-311)||(9382150-9382287)
chr8 (105-314)||(9137573-9137781)
chr8 (206-314)||(23232178-23232289)
chr8 (238-312)||(28509292-28509367)
chr8 (78-164)||(23232093-23232179)
chr8 (265-314)||(45117505-45117555)
chr8 (262-314)||(7972993-7973046)
chr8 (184-312)||(2879149-2879280)
chr8 (265-312)||(6927561-6927609)
chr8 (264-314)||(4432086-4432137)
chr8 (265-314)||(1981635-1981685)
chr8 (265-314)||(3762736-3762786)
chr8 (265-314)||(31597561-31597611)
chr8 (262-314)||(16729769-16729822)
chr8 (78-166)||(24682815-24682904)
chr8 (262-312)||(39906288-39906339)
chr8 (78-164)||(961164-961250)
chr8 (263-314)||(32073297-32073349)
[»] chr2 (32 HSPs)
chr2 (78-314)||(13597701-13597939)
chr2 (78-314)||(19091010-19091248)
chr2 (156-314)||(30386893-30387053)
chr2 (81-312)||(41302278-41302510)
chr2 (78-238)||(31548989-31549149)
chr2 (119-311)||(14904066-14904261)
chr2 (100-292)||(11199133-11199327)
chr2 (116-292)||(25621500-25621678)
chr2 (142-314)||(10022949-10023124)
chr2 (100-296)||(24484534-24484729)
chr2 (193-314)||(9057439-9057561)
chr2 (106-296)||(38422792-38422982)
chr2 (106-314)||(6883037-6883249)
chr2 (238-312)||(7880347-7880422)
chr2 (238-312)||(19678060-19678135)
chr2 (158-314)||(38566113-38566264)
chr2 (238-294)||(29303227-29303283)
chr2 (237-312)||(2565653-2565729)
chr2 (184-312)||(18781114-18781245)
chr2 (238-305)||(25416049-25416117)
chr2 (265-312)||(45277506-45277554)
chr2 (262-312)||(22575996-22576047)
chr2 (264-314)||(41422863-41422914)
chr2 (262-314)||(27861833-27861886)
chr2 (265-305)||(33054821-33054862)
chr2 (184-296)||(90261-90375)
chr2 (106-165)||(43673132-43673191)
chr2 (265-314)||(44314058-44314108)
chr2 (265-314)||(44322237-44322287)
chr2 (262-314)||(41825976-41826029)
chr2 (159-223)||(9425108-9425172)
chr2 (265-312)||(33015208-33015256)
[»] chr7 (24 HSPs)
chr7 (42-314)||(40934088-40934362)
chr7 (106-314)||(9420494-9420705)
chr7 (107-314)||(21863638-21863847)
chr7 (132-299)||(45445949-45446117)
chr7 (81-291)||(5770933-5771141)
chr7 (156-306)||(28460145-28460299)
chr7 (205-314)||(43179378-43179489)
chr7 (202-302)||(35118198-35118300)
chr7 (116-289)||(8113779-8113954)
chr7 (238-312)||(8069612-8069687)
chr7 (238-312)||(48636734-48636809)
chr7 (208-314)||(39038847-39038956)
chr7 (175-300)||(8604521-8604647)
chr7 (238-312)||(48238491-48238566)
chr7 (100-206)||(44733783-44733889)
chr7 (238-295)||(6189391-6189448)
chr7 (106-208)||(3123848-3123950)
chr7 (263-312)||(29636904-29636954)
chr7 (264-312)||(24441941-24441990)
chr7 (77-165)||(39038749-39038837)
chr7 (130-220)||(36628593-36628683)
chr7 (262-314)||(20394797-20394850)
chr7 (238-296)||(19311928-19311986)
chr7 (265-314)||(31072539-31072589)
[»] chr4 (28 HSPs)
chr4 (77-314)||(10373195-10373436)
chr4 (106-314)||(41509049-41509258)
chr4 (106-314)||(52459055-52459266)
chr4 (106-314)||(52460312-52460523)
chr4 (156-312)||(21320054-21320212)
chr4 (107-314)||(1843017-1843223)
chr4 (116-312)||(10142184-10142383)
chr4 (100-314)||(24611199-24611416)
chr4 (100-314)||(9921704-9921916)
chr4 (132-220)||(3665318-3665406)
chr4 (26-314)||(25201049-25201322)
chr4 (193-314)||(29282952-29283075)
chr4 (215-312)||(42512194-42512294)
chr4 (238-312)||(28143443-28143518)
chr4 (116-312)||(13957291-13957477)
chr4 (262-314)||(36213772-36213824)
chr4 (238-312)||(51337683-51337758)
chr4 (237-314)||(3665450-3665528)
chr4 (262-314)||(39480263-39480316)
chr4 (238-312)||(14192311-14192386)
chr4 (106-159)||(6830670-6830723)
chr4 (100-169)||(9896393-9896461)
chr4 (240-312)||(51890422-51890495)
chr4 (240-312)||(51890696-51890769)
chr4 (262-312)||(6261593-6261644)
chr4 (264-314)||(9900076-9900127)
chr4 (132-219)||(42511603-42511690)
chr4 (265-314)||(10095037-10095087)
[»] scaffold1364 (1 HSPs)
scaffold1364 (100-314)||(883-1104)
[»] chr6 (16 HSPs)
chr6 (144-306)||(3229093-3229254)
chr6 (132-312)||(11680737-11680920)
chr6 (132-314)||(26817397-26817581)
chr6 (238-312)||(33516614-33516689)
chr6 (106-296)||(4065443-4065633)
chr6 (100-225)||(22524844-22524969)
chr6 (265-314)||(1422994-1423044)
chr6 (238-296)||(14677787-14677845)
chr6 (265-314)||(21442676-21442726)
chr6 (175-314)||(31129784-31129921)
chr6 (262-314)||(1131813-1131866)
chr6 (126-220)||(4090669-4090763)
chr6 (265-314)||(15060205-15060255)
chr6 (265-314)||(22012131-22012181)
chr6 (265-314)||(34043583-34043633)
chr6 (215-312)||(13758742-13758840)
[»] scaffold0002 (1 HSPs)
scaffold0002 (78-314)||(98177-98415)
[»] scaffold0263 (1 HSPs)
scaffold0263 (142-300)||(18489-18649)
[»] scaffold0160 (1 HSPs)
scaffold0160 (143-314)||(25157-25331)
[»] scaffold1266 (1 HSPs)
scaffold1266 (78-312)||(1354-1591)
[»] scaffold0116 (1 HSPs)
scaffold0116 (144-296)||(40874-41024)
[»] scaffold0137 (1 HSPs)
scaffold0137 (117-220)||(21299-21402)
[»] scaffold0743 (1 HSPs)
scaffold0743 (238-312)||(3291-3366)
[»] scaffold0064 (1 HSPs)
scaffold0064 (153-311)||(60427-60590)
[»] scaffold0178 (2 HSPs)
scaffold0178 (210-312)||(2387-2492)
scaffold0178 (132-218)||(1121-1206)
[»] scaffold0016 (4 HSPs)
scaffold0016 (265-314)||(88122-88172)
scaffold0016 (265-314)||(88598-88648)
scaffold0016 (265-314)||(89074-89124)
scaffold0016 (262-314)||(87645-87698)
[»] scaffold0552 (1 HSPs)
scaffold0552 (106-159)||(10171-10224)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 24185428 - 24185729
Alignment:
Q  15 tatcatatgttaaatgcaacaattgataaaaaataacaacaaaacataagaagcggagtggctcacatgatcataaatgcatttgacatcagtttcatga 114  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24185428 tatcatatgctaaatgcaccaattgataaaaaataataacaaaacataagaagcggagtggctcacatgatcataaatgcatttgacatcagtttcatga 24185527  T
Q  115 tcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaa 214  Q
    |||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24185528 tcatgaatgcgttttacatgattttgtattatcaaattcaattttacaatccttttaactaattcaagcaagtttacattactatattgatataatttaa 24185627  T
Q  215 ttttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttataaaattatcccaattt 312  Q
    ||||||||||| |||||||||||  |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24185628 ttttttggaacttctgaaagacaagattaagattaattttgctagtagacccattttcaactaaaatataatttgttttgttataaaattatcccaattt 24185727  T
Q  313 ct 314  Q
    ||    
T  24185728 ct 24185729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 100 - 314
Target Start/End: Original strand, 5509703 - 5509920
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactat 199  Q
    |||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||| ||||||| ||||||  |||||||| ||||| ||||||||||    
T  5509703 acatcagtttcatgattatgaatgcgtctcacatgatcttgcattatcaaattcaattctgcaatctttttaatcaattcaagaaagttgacattactat 5509802  T
Q  200 attgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat- 296  Q
    ||||||||||||||| |||||||||  | |||||||||  ||||||||||||||   |||||| | |||||||| |||||||| ||||| |||||||||     
T  5509803 attgatataatttaaatttttggaatctttgaaagacaagattaagattaatttatctagtaggcacattttcatctaaaatagaatttattttgttatg 5509902  T
Q  297 aaaattatcccaatttct 314  Q
    ||||||||||||||||||    
T  5509903 aaaattatcccaatttct 5509920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 47559475 - 47559613
Alignment:
Q  175 aattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagacaat--taagattaatttcgttagtagacccattttcaa 272  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||  |||||||||||||  |||||  | |||||| ||    
T  47559475 aattcaagaaagttgacattactatattgatataatttaattttttgaaactt-tgaaagacaatattaagattaatttctctagtaagcacatttttaa 47559573  T
Q  273 ctaaaatataatttgttttgttataaaattatcccaattt 312  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47559574 ctaaaatataatttgttttgttataaaattatcccaattt 47559613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 117 - 312
Target Start/End: Original strand, 5209545 - 5209743
Alignment:
Q  117 atgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaatt 216  Q
    ||||||| |||||  ||||| ||| |||||||||||| |   ||||||||||| ||  |||||||| ||||| |||||||||||||||| |||| || ||    
T  5209545 atgaatgtgtctcgcatgatcttgcattatcaaattcgaccatgcaatcctttcaatcaattcaagaaagttgacattactatattgatgtaatatattt 5209644  T
Q  217 ttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    ||||| ||| | ||||| |||  ||||||||||||||| |||||||    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5209645 ttttgaaacctttgaaaaacaagattaagattaatttctttagtaggtatattttcaactaaaatataatttgttttgttatgaaaattatcccaattt 5209743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 28945807 - 28945882
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| | |||| |||||||||    
T  28945807 attaagattaatttctctagtagatccattttcaactaaaatataatttgttttgttatgagaattctcccaattt 28945882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 36296809 - 36296734
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||||||    
T  36296809 attaagattaatttcttcagtaggcccattttcaactaaaatataatttgtttggttatgaaaattctcccaattt 36296734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 42722344 - 42722269
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||||||    
T  42722344 attaagattaatttcttcagtaggcccattttcaactaaaatataatttgtttggttatgaaaattctcccaattt 42722269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 9023371 - 9023255
Alignment:
Q  198 atattgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgtta 295  Q
    |||||||||||||||| ||||||||||  | | ||||||||  ||  | ||||||||  |||||||| ||||||||||||||||| ||||||||||||||    
T  9023371 atattgatataatttatttttttggaatctttaaaagacaagattttggttaatttctctagtagactcattttcaactaaaatagaatttgttttgtta 9023272  T
Q  296 -taaaattatcccaatt 311  Q
     ||||| ||||||||||    
T  9023271 ttaaaactatcccaatt 9023255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 41665937 - 41665661
Alignment:
Q  20 tatgttaaatgcaacaattgataaaaaataacaacaaaacataagaagcggagtggctcacatgatcataaatgcatttgacatcagtttcatgatcatg 119  Q
    ||||| ||||||| | |||||||||||| |||||||||||| || |||  ||||||  || |||||| ||||||  | | ||||| |||||||||||| |    
T  41665937 tatgtcaaatgcagctattgataaaaaagaacaacaaaacaaaaaaagttgagtgggccatatgatcctaaatgtgtctcacatcggtttcatgatcacg 41665838  T
Q  120 aatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatt-taatttt 218  Q
     ||| |||||  ||||| ||   ||||||||||| ||| |||||  |||| |  || |||||| ||||| |||||  || |||||||||||| |   |||    
T  41665837 tatgtgtctcgcatgatcttacgttatcaaattcgattatgcaactctttcagttagttcaagaaagttgacatt--tacattgatataattatttattt 41665740  T
Q  219 ttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgtta 295  Q
    || ||||||  ||||||||  ||||| | ||||||   |||||||| |||||||||||||||||||||||  |||||||    
T  41665739 ttagaacattcgaaagacaagattaaaactaatttatctagtagacacattttcaactaaaatataatttactttgtta 41665661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 47397449 - 47397528
Alignment:
Q  175 aattcaagtaagtttacattactatattgatataattta-attttttggaacatctgaaagaca--attaagattaattt 251  Q
    |||||||| ||||| ||||||||||||||||||||||||  ||||||||||| | |||||||||  ||||||||||||||    
T  47397449 aattcaagaaagttgacattactatattgatataatttattttttttggaacctttgaaagacaagattaagattaattt 47397528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 49229351 - 49229402
Alignment:
Q  264 cattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  49229351 cattttcaactaaaatataatttattttgttatgaaaattatcccaatttct 49229402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 12027929 - 12027845
Alignment:
Q  214 attttttggaacatctgaaagacaat--taagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat 296  Q
    ||||||| |||| | |||||||||||  |||||||||||||  || |||  ||||||||||||||||| ||||||||||||||||    
T  12027929 atttttttgaacctttgaaagacaatattaagattaatttctctaataggtccattttcaactaaaatctaatttgttttgttat 12027845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 23664120 - 23664173
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  23664120 cccattttcaactaaaatagaatttgctttgttatgaaaattatcccaatttct 23664173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 25095255 - 25095204
Alignment:
Q  264 cattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  25095255 cattttcaactaaaatagaatttgctttgttatgaaaattatcccaatttct 25095204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 44310643 - 44310545
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattacta 198  Q
    ||||| |||| || || ||||||| || ||| ||||| ||| |||||||||||||||| |||||| |||| ||  |||||||| ||||| |||||||||    
T  44310643 acatcggttttataatgatgaatgtgtttcacatgatcttgcattatcaaattcaattatgcaattctttcaatcaattcaagaaagttgacattacta 44310545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 26221790 - 26221716
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||| || |||||  |||||||| |||||||||| |||||||||||||| || ||| |||||||||    
T  26221790 attaagattaattttgt-agtaggtccattttctactaaaatattatttgttttgttatgaagattctcccaattt 26221716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 5049544 - 5049494
Alignment:
Q  265 attttcaactaaaatataatttgttttgtta-taaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||||||||    
T  5049544 attttcaactaaaatagaatttgctttgttacgaaaattatcccaatttct 5049494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 17967339 - 17967389
Alignment:
Q  265 attttcaactaaaatataatttgttttgtta-taaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||||||||    
T  17967339 attttcaactaaaatagaatttgctttgttacgaaaattatcccaatttct 17967389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 21906468 - 21906418
Alignment:
Q  265 attttcaactaaaatataatttgttttgtta-taaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||||||||    
T  21906468 attttcaactaaaatagaatttgctttgttacgaaaattatcccaatttct 21906418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 27430805 - 27430855
Alignment:
Q  265 attttcaactaaaatataatttgttttgtta-taaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||||||||    
T  27430805 attttcaactaaaatagaatttgctttgttacgaaaattatcccaatttct 27430855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 34307461 - 34307511
Alignment:
Q  265 attttcaactaaaatataatttgttttgtta-taaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||||||||    
T  34307461 attttcaactaaaatagaatttgctttgttacgaaaattatcccaatttct 34307511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 48596367 - 48596417
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| |||||||||| |||||||    
T  48596367 attttcaactaaaatagaatttgctttgttatgaaaattatcctaatttct 48596417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 12783987 - 12784032
Alignment:
Q  267 tttcaactaaaatataatttgttttgttataaaattatcccaattt 312  Q
    |||| ||| ||||||||||||||||| |||||||||||| ||||||    
T  12783987 tttcgacttaaatataatttgttttgctataaaattatcgcaattt 12784032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 82 - 314
Target Start/End: Original strand, 8806149 - 8806383
Alignment:
Q  82 tgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaa 181  Q
    ||||| ||||||| | | |||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||    
T  8806149 tgatcctaaatgcgtctcacatcgatttcatgatcatgaatgcgtctcacatgattttgtattatcaaattcaattttgcaatccttttaatcaattcaa 8806248  T
Q  182 gtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaat 279  Q
    | ||||| ||||||||||| ||||||||||||| |||||| ||| | |||||||||  ||||| ||||||||| ||| || || ||||||||||||||||    
T  8806249 gaaagttgacattactataatgatataatttaaatttttgaaacctttgaaagacaagattaaaattaatttctttactatactcattttcaactaaaat 8806348  T
Q  280 ataatttgttttgttataaaattatcccaatttct 314  Q
    |||||||||||||||||||||||||||||||||||    
T  8806349 ataatttgttttgttataaaattatcccaatttct 8806383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 78 - 314
Target Start/End: Original strand, 38915541 - 38915779
Alignment:
Q  78 cacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaat 177  Q
    ||||||||| ||||||| |   |||||||||| |||||||||||||||| ||  ||||||| | ||||||||||||||||||||||||||||| |  |||    
T  38915541 cacatgatcctaaatgcgtcccacatcagtttaatgatcatgaatgcgtatcgcatgatttagcattatcaaattcaattttgcaatcctttttatcaat 38915640  T
Q  178 tcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaacta 275  Q
    || || ||||| |||||||||||  ||||||||||||||||||||||| | |||||||||  ||||||| |||||||  |||||| || |||||||||||    
T  38915641 tctagaaagttgacattactataacgatataatttaattttttggaacctttgaaagacaacattaagactaatttctctagtaggcctattttcaacta 38915740  T
Q  276 aaatataatttgttttgttataaaattatcccaatttct 314  Q
    |||||||  || |||||||||||||||||||||||||||    
T  38915741 aaatatatatttttttgttataaaattatcccaatttct 38915779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 102 - 314
Target Start/End: Complemental strand, 3654925 - 3654711
Alignment:
Q  102 atcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatat 201  Q
    ||||||||||||||||| |||||||||   ||||||||| ||| ||||||| ||||||||||||  |||||  |||||||| ||||| ||||||||||      
T  3654925 atcagtttcatgatcataaatgcgtcttgcatgattttgcattctcaaatttaattttgcaatctctttaatcaattcaagaaagttgacattactatga 3654826  T
Q  202 tgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttataaa 299  Q
    ||||||||||||||||||| |||| | |||||||||  ||||| |||| ||||  ||||||  |||||||||||||||||||||||| |||||| |||||    
T  3654825 tgatataatttaatttttttgaacctttgaaagacaagattaaaattagtttctctagtaggtccattttcaactaaaatataatttattttgtaataaa 3654726  T
Q  300 attatcccaatttct 314  Q
    ||||||  |||||||    
T  3654725 attatcttaatttct 3654711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 29789880 - 29789584
Alignment:
Q  20 tatgttaaatgcaacaattgataaaaaataacaacaaaacataagaagcggagtggctcacatgatcataaatgcatttgacatcagtttcatgatcatg 119  Q
    ||||| ||||||| | |||||||||||  |||||||||||| ||  ||   |||||  |||||||||  |||||| | | ||||| || |||||||||||    
T  29789880 tatgtcaaatgcagctattgataaaaag-aacaacaaaacaaaaagagtttagtgggccacatgatcccaaatgcgtctcacatcggtctcatgatcatg 29789782  T
Q  120 aatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttt 219  Q
    |||| |||||  ||||| ||  ||||||| |||||||| ||||| ||| ||||  |||||| | ||||| || ||||||||||||||||||||| |||||    
T  29789781 aatgtgtctcgcatgatcttacattatcatattcaattgtgcaaccctcttaatcaattcatgaaagttgacgttactatattgatataatttatttttt 29789682  T
Q  220 tggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    || ||  | ||||| |||  |||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||    
T  29789681 tgaaatctttgaaaaacaagattaagattaatttctctagtagacccattttcaactaaaatagaatttgttttgttatgaaaattattccaatttct 29789584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 100 - 314
Target Start/End: Original strand, 13820714 - 13820934
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactat 199  Q
    ||||| ||||||||| | |||||||||||   ||||| ||| | |||||||||||||| ||||||||||||||  |||| ||| ||||| ||||||||||    
T  13820714 acatcggtttcatgaacgtgaatgcgtcttgcatgatgttgcactatcaaattcaattatgcaatccttttaatcaatttaagaaagttgacattactat 13820813  T
Q  200 attgatataattt---aattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgtt 294  Q
    |||||||||||||     ||||||  |   | |||||||||  ||| ||||||||||  ||||||||||||||||||||||||||| | |||||||||||    
T  13820814 attgatataatttgtattttttttttattctttgaaagacaagatttagattaatttatttagtagacccattttcaactaaaatagattttgttttgtt 13820913  T
Q  295 at-aaaattatcccaatttct 314  Q
    || |||||||||| |||||||    
T  13820914 atgaaaattatccaaatttct 13820934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 132 - 314
Target Start/End: Original strand, 13826095 - 13826285
Alignment:
Q  132 atgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataattta---attttttggaacatc 228  Q
    ||||| ||| |||||||||||||||| || ||||||||  |  |||||||| ||||| ||||||||||||||||||||||||   |||||||||||  |     
T  13826095 atgatcttgcattatcaaattcaattatgaaatcctttcgatcaattcaagaaagttgacattactatattgatataatttatttattttttggaatttt 13826194  T
Q  229 tgaaagaca--attaagattaatttcgttagtagaccc--attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||| |||||  ||||||||||||||   |||||  |||  |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  13826195 tgagagacaagattaagattaatttatctagtaagcccatattttcaactaaaatagaatttgttttgttatgaaaattatcccaatttct 13826285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 23151681 - 23151538
Alignment:
Q  81 atgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattca 180  Q
    |||||||| ||||| | | ||||| ||||||||||||||||||| ||||  ||||| ||| | |||||||||||||||||||||||||| ||  ||||||    
T  23151681 atgatcatgaatgcgtcttacatcggtttcatgatcatgaatgcatctcgcatgatcttgcaatatcaaattcaattttgcaatcctttcaatcaattca 23151582  T
Q  181 agtaagtttacattactatattgatataatttaattttttggaa 224  Q
    || || || |||||||  ||||||||||||||| ||||||||||    
T  23151581 agaaatttgacattacagtattgatataatttatttttttggaa 23151538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 304
Target Start/End: Original strand, 5121073 - 5121245
Alignment:
Q  137 tttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagac 236  Q
    |||| |||||||||||||||| ||||||||||| ||  |||||||| ||||| |||| ||||||||||||||||||| |||||| |||| | ||||||||    
T  5121073 tttgcattatcaaattcaattatgcaatcctttcaaacaattcaagaaagttgacatcactatattgatataatttatttttttagaacctttgaaagac 5121172  T
Q  237 a--attaagat--taatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattat 304  Q
    |  ||||||||  |||||||  |||||| |  |||||||| ||||||| |||||||||| |||| ||||||||    
T  5121173 aagattaagattataatttctctagtaggctaattttcaattaaaataaaatttgttttattatgaaaattat 5121245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 132 - 314
Target Start/End: Original strand, 16040070 - 16040251
Alignment:
Q  132 atgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctga 231  Q
    ||||| ||| |||||||||||||||| ||||||||||| ||  |||||||| ||| | |||||| |||||||||||| |||   |||||||||  | |||    
T  16040070 atgatcttgcattatcaaattcaattctgcaatcctttcaatcaattcaagaaagatgacattattatattgatatagttt---tttttggaattt-tga 16040165  T
Q  232 aagacaat--taagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||| |||  |||||||||| ||  |||||| ||||||||||| |||||||  |||||||||||||| ||||||||| ||||||||    
T  16040166 aagataatattaagattaatatctctagtaggcccattttcaattaaaataagatttgttttgttatgaaaattatctcaatttct 16040251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 280
Target Start/End: Original strand, 20891274 - 20891424
Alignment:
Q  132 atgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctga 231  Q
    ||||| ||| ||||||||| |||||| | ||||||||| ||| |||||||| ||||| ||||| ||||||| |||||||||| ||||| ||||  | |||    
T  20891274 atgatcttgcattatcaaactcaattcttcaatcctttcaaccaattcaagaaagttgacatttctatattaatataatttattttttgggaatctttga 20891373  T
Q  232 aagacaa--ttaagattaatttcgttagtagacccattttcaactaaaata 280  Q
    |||||||  ||||||||||||||  || ||| |||||||||||||| ||||    
T  20891374 aagacaaaattaagattaatttctctaataggcccattttcaactataata 20891424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 289
Target Start/End: Original strand, 43171284 - 43171443
Alignment:
Q  132 atgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctg- 230  Q
    ||||| ||| ||||||||||| || | ||||||| |||  |  |||| ||| ||||| |||||||||||||||| ||||||| ||||||||||| | ||     
T  43171284 atgatcttgcattatcaaatttaactatgcaatcatttcgatcaattaaagaaagttgacattactatattgatgtaatttatttttttggaacctttga 43171383  T
Q  231 -aaagacaattaagattaatttcgttagtagacccattttcaactaaaatataatttgtt 289  Q
     ||| | ||||||||||||||||  ||||||  ||||||||||||||||||| |||||||    
T  43171384 aaaaaaaaattaagattaatttctctagtaggtccattttcaactaaaatatcatttgtt 43171443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 314
Target Start/End: Complemental strand, 37134932 - 37134767
Alignment:
Q  152 tcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagacaa--ttaagattaat 249  Q
    |||||| ||||||||||| ||  || ||||| || || |||||||||||||||||||||||| ||||| | ||| | ||||||||||  | || ||||||    
T  37134932 tcaattctgcaatcctttcaatcaaatcaagaaaattgacattactatattgatataatttattttttcgaaacctttgaaagacaagatcaaaattaat 37134833  T
Q  250 ttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
     |   ||||||    |||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  37134832 atttctagtaggtgtattttcaactaaaatataatttgttttgttatgaaaattattccaatttct 37134767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 6769315 - 6769415
Alignment:
Q  202 tgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttataaa 299  Q
    ||||||||||||||||||||||| || | ||||||||  |||| |||||||||  |||||| |  ||||| |||||||||||||||||||||||||||||    
T  6769315 tgatataatttaattttttggaaaatttcaaagacaacattaaaattaatttc--tagtaggcttatttttaactaaaatataatttgttttgttataaa 6769412  T
Q  300 att 302  Q
    |||    
T  6769413 att 6769415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 23318486 - 23318577
Alignment:
Q  78 cacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttt 169  Q
    ||||||||| ||||||| | | |||| ||||||||||| |||||||| ||||  ||||||||| |||||||||||||||  |||||||||||    
T  23318486 cacatgatcctaaatgcgtctcacattagtttcatgataatgaatgcatctcgcatgattttgcattatcaaattcaatcatgcaatccttt 23318577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 38491153 - 38491078
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    ||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||    
T  38491153 attaagattaatttatctagtaggcccattttcaactaaaatataatttgttttgttatgaaaattctcctaattt 38491078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 7850421 - 7850346
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||   |||||  |||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  7850421 attaagattaatttctccagtaggtccattttcaactaaaatataatttgttttgttatgaaaattctctcaattt 7850346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 23319703 - 23319797
Alignment:
Q  184 aagtttacattactatattgatataatttaa-ttttttggaacatctgaaagac--aattaagattaatttcgttagtagacccattttcaacta 275  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||   ||||||||  |||||||||||||||| ||||||  || |||||||||||    
T  23319703 aagttgacattactatattgatataatttaatttttttgaaacccttgaaagacaaaattaagattaatttctttagtatgccaattttcaacta 23319797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 5578620 - 5578673
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  5578620 cccattttcaactaaaatagaatttgctttgttatgaaaattatcccaatttct 5578673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 9409564 - 9409617
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  9409564 cccattttcaactaaaatagaatttgctttgttatgaaaattatcccaatttct 9409617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 42879687 - 42879634
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  42879687 cccattttcaactaaaatagaatttgctttgttataaaaattatcccaatttct 42879634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 29150590 - 29150502
Alignment:
Q  106 gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacatt 194  Q
    ||||||| |||||||||||||| || ||||| ||| |||||||| ||||||| ||||||| ||| ||  |||||||| ||||| |||||    
T  29150590 gtttcataatcatgaatgcgtcacacatgatattgcattatcaacttcaattatgcaatcttttcaatcaattcaagaaagttgacatt 29150502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 296
Target Start/End: Original strand, 14651669 - 14651783
Alignment:
Q  184 aagtttacattactatattgatataatttaattttttggaacatctgaaagacaat--taagattaatttcgttagtagacccattttcaactaaaatat 281  Q
    ||||||| |||||||||||||||||||| | || ||| | | |  | |||| ||||  ||||||||||||   || ||| ||||||||||||||||||||    
T  14651669 aagtttatattactatattgatataattaatttattttggatactttaaaggcaatattaagattaatttttctaataggcccattttcaactaaaatat 14651768  T
Q  282 aatttgttttgttat 296  Q
     ||| ||||||||||    
T  14651769 tattcgttttgttat 14651783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 32698855 - 32698816
Alignment:
Q  256 agtagacccattttcaactaaaatataatttgttttgtta 295  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  32698855 agtagacccattttcaactaaaatatcgtttgttttgtta 32698816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 13382615 - 13382665
Alignment:
Q  265 attttcaactaaaatataatttgttttgtta-taaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||||||||    
T  13382615 attttcaactaaaatagaatttgctttgttacgaaaattatcccaatttct 13382665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 23962939 - 23962889
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||| ||||||||    
T  23962939 attttcaactaaaatagaatttgctttgttatgaaaattatctcaatttct 23962889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 13490482 - 13490429
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||| |||||| |||||||| ||||| ||| ||||||||    
T  13490482 cccattttcaactaaaatagaatttgctttgttatgaaaatcatctcaatttct 13490429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 80 - 312
Target Start/End: Original strand, 30190997 - 30191232
Alignment:
Q  80 catgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattc 179  Q
    ||||||| ||||||| | | ||||||||||||||||||||||||||||||  ||||||| | |||||||||||||||||||||||||||||||  |||||    
T  30190997 catgatcctaaatgcgtctcacatcagtttcatgatcatgaatgcgtctcgcatgatttagcattatcaaattcaattttgcaatccttttaatcaattc 30191096  T
Q  180 aagtaagtttacattactatattgatataatttaa-ttttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaa 276  Q
    ||| ||||| ||||||||||| | ||||||||||| ||||||||||||| |||||||||  |||||||||||||||  |||||| || ||||||||||||    
T  30191097 aagaaagttgacattactataattatataatttaatttttttggaacatttgaaagacaacattaagattaatttctctagtaggcctattttcaactaa 30191196  T
Q  277 aatataatttgttttgttataaaattatcccaattt 312  Q
    |||||||||| |||||||||||||||||| ||||||    
T  30191197 aatataatttcttttgttataaaattatctcaattt 30191232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 100 - 314
Target Start/End: Complemental strand, 29714058 - 29713845
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactat 199  Q
    ||||| ||||||||||||||||||||||||| ||||| ||| | ||| |||||||||||||||||||||| ||  |||||||| || || ||||||| ||    
T  29714058 acatcggtttcatgatcatgaatgcgtctcacatgatcttgcaatattaaattcaattttgcaatcctttcaatcaattcaagaaatttgacattacaat 29713959  T
Q  200 attgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat- 296  Q
    |||||||||||||| |||||||||||    |||||||||  ||||||||||||||||    || | |||||||||||||||||||||||||||||||||     
T  29713958 attgatataatttatttttttggaaccatagaaagacaagattaagattaatttcgt----aggctcattttcaactaaaatataatttgttttgttatg 29713863  T
Q  297 aaaattatcccaatttct 314  Q
    ||||||||||||||||||    
T  29713862 aaaattatcccaatttct 29713845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 116 - 314
Target Start/End: Complemental strand, 1424933 - 1424734
Alignment:
Q  116 catgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaat 215  Q
    ||||||||||| ||  ||||||| | ||||||||||||||||||||||||||||| |  ||||| || ||||| |||||||||||  |||||||||||||    
T  1424933 catgaatgcgtatcgcatgatttagcattatcaaattcaattttgcaatcctttttatcaattctagaaagttgacattactataacgatataatttaat 1424834  T
Q  216 tttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttataaaattatcccaatttc 313  Q
    |||||||||| | ||| |||||  |||||||||||||||  |||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  1424833 tttttggaacctttgatagacaacattaagattaatttctctagtaggcctattttcaactaaaatat-attttttttgttataaaattatcccaatttc 1424735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 116 - 312
Target Start/End: Complemental strand, 47185205 - 47185006
Alignment:
Q  116 catgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaat 215  Q
    |||||||| |||||| ||||||||||| |||||||||||| | ||||||| ||| ||  |||||||| ||||| |||||| ||||||||| ||||||  |    
T  47185205 catgaatgtgtctcacatgattttgtactatcaaattcaactatgcaatcatttcaatcaattcaagaaagttgacattattatattgatgtaatttgtt 47185106  T
Q  216 tttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||| | |||||||||  |||||||||||||||  |||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47185105 tttttggaacctttgaaagacaagattaagattaatttctctagtgggtccattttcaactaaaatataatttgttttgttatgaaaattatcccaattt 47185006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 100 - 314
Target Start/End: Complemental strand, 12893307 - 12893089
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactat 199  Q
    ||||| ||||||| ||||||||||||| |   | ||| ||| |||||||||||||||| ||||||||||||||  |||||||| ||||| ||||||||||    
T  12893307 acatcggtttcataatcatgaatgcgttttgcaagatcttgcattatcaaattcaattatgcaatccttttaatcaattcaagaaagttgacattactat 12893208  T
Q  200 attgatataattta-attttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat 296  Q
     |||||||||||||  |||||||||| || ||||||| |  ||||| |||||||||  ||||||  |||||||||||||||||| ||| |||||| ||||    
T  12893207 gttgatataatttattttttttggaatatttgaaagataagattaaaattaatttctctagtaggtccattttcaactaaaatagaatatgttttcttat 12893108  T
Q  297 -aaaattatcccaatttct 314  Q
     ||||||||| ||||||||    
T  12893107 aaaaattatctcaatttct 12893089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 10992911 - 10993137
Alignment:
Q  88 taaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagt 187  Q
    ||||||| ||| ||||| ||||||||||| ||||||||||||  ||||| ||| | |||||||||||||||||||||||||| ||  |||||||| ||||    
T  10992911 taaatgcgtttcacatcggtttcatgatcttgaatgcgtctcgcatgatcttgcaatatcaaattcaattttgcaatcctttcaatcaattcaagaaagt 10993010  T
Q  188 ttacattactatattgatataatttaatttttt-ggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataat 284  Q
    | ||||||| |||||||||||||||| |||||| ||||     ||||||||  | ||| |||||||||    |||| | ||||||||||||||||  |||    
T  10993011 tgacattacaatattgatataatttatttttttgggaagggtagaaagacaagaataaaattaatttc----gtaggctcattttcaactaaaatgaaat 10993106  T
Q  285 ttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||| |||||||||| |||||||    
T  10993107 ttgttttgttatgaaaattatccaaatttct 10993137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 144 - 314
Target Start/End: Original strand, 11639884 - 11640057
Alignment:
Q  144 tatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagac--aatta 241  Q
    ||||||||||| || ||||||||||| ||  |||||||| || || |||||||| ||||||||||||||| ||||||||||  | ||||||||   ||||    
T  11639884 tatcaaattcagttatgcaatcctttcaataaattcaagaaaattgacattactgtattgatataatttatttttttggaatctttgaaagactatatta 11639983  T
Q  242 agattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    || ||||||||   |||||  |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  11639984 aggttaatttctcaagtaggtccattttcaactaaaataaaatttattttgttatgaaaattatcccaatttct 11640057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 11830309 - 11830426
Alignment:
Q  71 agtggctcacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatcctttt 170  Q
    ||||| |||||||||| ||||||| | | |||||||||||||||||||||||| |||||| | ||||| | |||||||||||||||||||||||||||||    
T  11830309 agtgggtcacatgatcctaaatgcgtctcacatcagtttcatgatcatgaatgtgtctcacaagatttagcattatcaaattcaattttgcaatcctttt 11830408  T
Q  171 aactaattcaagtaagtt 188  Q
    ||  |||||||| |||||    
T  11830409 aatcaattcaagaaagtt 11830426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 309
Target Start/End: Original strand, 3917989 - 3918190
Alignment:
Q  117 atgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaatt 216  Q
    |||||||||||||  ||||| ||| |||||||||||||||| | |||| |||| ||  |||||||| ||||| |||||||||||||||||||||||||||    
T  3917989 atgaatgcgtctcgcatgatcttgcattatcaaattcaattattcaattctttcaatcaattcaagaaagttgacattactatattgatataatttaatt 3918088  T
Q  217 tttt------ggaacatctgaaagacaat--taagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatccc 307  Q
    ||||      ||||  | |||||||||||  |||||| |||||   | |||  |  |||||||||||||||| ||||||||||||||| | |||||||||    
T  3918089 ttttttttttggaatctttgaaagacaatattaagataaatttatcttgtaagcatattttcaactaaaatagaatttgttttgttatgagaattatccc 3918188  T
Q  308 aa 309  Q
    ||    
T  3918189 aa 3918190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 16876826 - 16876928
Alignment:
Q  202 tgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttataaa 299  Q
    |||||||||||||||||||| ||||| | ||||||||  ||||||||||||||  |||| |||  ||||||||||||||||| |||||||||||||||||    
T  16876826 tgatataatttaattttttgcaacattttaaagacaacattaagattaatttctctagttgacttattttcaactaaaatattatttgttttgttataaa 16876925  T
Q  300 att 302  Q
    |||    
T  16876926 att 16876928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 314
Target Start/End: Complemental strand, 53472346 - 53472160
Alignment:
Q  132 atgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataattta---attttttggaacatc 228  Q
    ||||| || ||||||  ||||||||| ||||||  ||| ||  |||||||| ||||| |||| | |||||||||||||||||   |||||||||||| |     
T  53472346 atgatcttatattatttaattcaattctgcaatattttcaatcaattcaagaaagtt-acat-attatattgatataatttatttattttttggaacctt 53472249  T
Q  229 tgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgtta-taaaattatcccaatttct 314  Q
    ||||| |||  ||||||||||||||   |||||| | |||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  53472248 tgaaatacatgattaagattaatttatgtagtaggctcattttcaactaaaatataatttgttttgttattaaaattatctcaatttct 53472160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 1698585 - 1698458
Alignment:
Q  190 acattactatattgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttg 287  Q
    |||||||||||||||||||||||| ||| ||||||  | | ||||||||  |||||||||||||   ||||| ||| |||||||||| ||||| ||||||    
T  1698585 acattactatattgatataatttattttcttggaatctttcaaagacaagattaagattaatttatctagtaaacctattttcaacttaaatagaatttg 1698486  T
Q  288 ttttgtta-taaaattatcccaatttct 314  Q
    ||||||||  ||||||||| ||||||||    
T  1698485 ttttgttaggaaaattatctcaatttct 1698458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 40145622 - 40145515
Alignment:
Q  197 tatattgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgtt 294  Q
    |||| ||||||||||||||| |||||||||| | ||| ||||  |||||||||||||   || |||||  ||||| ||||||||||||||||||||||||    
T  40145622 tataatgatataatttaattctttggaacatttaaaaaacaacattaagattaatttttctattagacttattttgaactaaaatataatttgttttgtt 40145523  T
Q  295 ataaaatt 302  Q
    ||||||||    
T  40145522 ataaaatt 40145515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 23044884 - 23044959
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  23044884 attaagattaatttctccagtaggcccattttcaactaaaatataatttgttttgttatgaaaattctcccaattt 23044959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 31884944 - 31885019
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||  |||||  ||||||||||||||||||||||||| ||||||||| | |||| |||||||||    
T  31884944 attaagattaatttctctagtatgcccattttcaactaaaatataatttattttgttatgagaattttcccaattt 31885019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 10994164 - 10994214
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  10994164 attttcaactaaaatataatttgctttgttatgaaaattatcccaatttct 10994214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 6024753 - 6024828
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    ||||||||||||||   |||||| ||||||||| |||||||||| |||||||||||||| || ||| |||||||||    
T  6024753 attaagattaatttttctagtaggcccattttctactaaaatattatttgttttgttatgaagattctcccaattt 6024828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 27941531 - 27941581
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  27941531 attttcaactaaaatagaatttgctttgttatgaaaattatcccaatttct 27941581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 44663188 - 44663270
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaag 182  Q
    ||||| |||||||||| |||||| ||||||  ||||| ||| | ||||||||| |||||||||||||||| ||  ||||||||    
T  44663188 acatcggtttcatgataatgaatacgtctcgcatgatcttgcaatatcaaatttaattttgcaatcctttcaatcaattcaag 44663270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 15760950 - 15760898
Alignment:
Q  263 ccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||||| |||||| | |||||| ||||||||||||||||||    
T  15760950 ccattttcaactaaaataaaatttgctatgttatgaaaattatcccaatttct 15760898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 44663338 - 44663389
Alignment:
Q  264 cattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||||||||||||||| | ||||||||  ||||||||    
T  44663338 cattttcaactaaaatataatttgttttgttttgaaaattatttcaatttct 44663389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 19157182 - 19157140
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcc 306  Q
    |||||||||||||||| ||||||||||||||| ||||||||||    
T  19157182 attttcaactaaaatagaatttgttttgttatgaaaattatcc 19157140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 53076983 - 53077033
Alignment:
Q  265 attttcaactaaaatataatttgttttgtta-taaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||||||||    
T  53076983 attttcaactaaaatagaatttgctttgttacgaaaattatcccaatttct 53077033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 100 - 314
Target Start/End: Original strand, 11648602 - 11648818
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactat 199  Q
    ||||| |||||||||||||||||| |||||  ||||||||| |||||||||||||||||||||||| ||||||  |||||||| ||||| || ||| |||    
T  11648602 acatcggtttcatgatcatgaatgtgtctcgcatgattttgcattatcaaattcaattttgcaatcattttaatcaattcaagaaagttaaccttagtat 11648701  T
Q  200 attgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttata 297  Q
    | ||||||||||||||| |||||||| | |||||||||  ||| |||||||||||  || |    |||||||||||||||||||||||||||||||||||    
T  11648702 aatgatataatttaattatttggaacctttgaaagacaagattgagattaatttctctaatgagtccattttcaactaaaatataatttgttttgttata 11648801  T
Q  298 aaattatcccaatttct 314  Q
    |||||||| ||||||||    
T  11648802 aaattatctcaatttct 11648818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 108 - 314
Target Start/End: Original strand, 24190205 - 24190410
Alignment:
Q  108 ttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatat 207  Q
    ||||||||| |||||||||||| |||||| ||| | ||||| |||||||||||||||||||| ||   ||||||  ||||| ||||||| ||||||||||    
T  24190205 ttcatgatcttgaatgcgtctcgtatgatcttgcaatatcatattcaattttgcaatcctttcaatccattcaaaaaagttgacattacaatattgatat 24190304  T
Q  208 aatttaattttttggaacatctgaaagac--aattaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattat 304  Q
    |||||| ||||||| |||    |||||||  |||||||||||| |||    |||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  24190305 aatttatttttttgaaaccatagaaagacaaaattaagattaacttc----gtagactcattttcaactaaaatataatttgttttgttataaaaattat 24190400  T
Q  305 cccaatttct 314  Q
    ||||||||||    
T  24190401 cccaatttct 24190410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 314
Target Start/End: Original strand, 28374488 - 28374629
Alignment:
Q  175 aattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaa 272  Q
    |||||||| ||||| | ||||||||||||||||||||||||||||| |||||| | ||| ||||  ||||||||||||||  ||||| || |||||||||    
T  28374488 aattcaagaaagttgaaattactatattgatataatttaatttttttgaacatttaaaaaacaagattaagattaatttctctagtaaactcattttcaa 28374587  T
Q  273 ctaaaatataatttgttttgttataaaattatcccaatttct 314  Q
    |||||||||||||| ||| ||||||||||||| | |||||||    
T  28374588 ctaaaatataatttatttggttataaaattattcaaatttct 28374629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 177 - 311
Target Start/End: Original strand, 9382150 - 9382287
Alignment:
Q  177 ttcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaact 274  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||||||| | ||||||| |  ||||| ||||||||   || |||  ||||||||||||    
T  9382150 ttcaagaaagttgacattactatattgatgtaatttaattttttggaacctttgaaagaaaagattaaaattaatttttctaataggtccattttcaact 9382249  T
Q  275 aaaatataatttgttttgttat-aaaattatcccaatt 311  Q
    |||||||||||||||||||||| |||||||||||||||    
T  9382250 aaaatataatttgttttgttatgaaaattatcccaatt 9382287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 314
Target Start/End: Complemental strand, 9137781 - 9137573
Alignment:
Q  105 agtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattga 204  Q
    |||||||||||||||||||||||||  ||||| ||  | ||| ||||||||||||| |||||||| ||  |||||||| |  || ||||||  |||||||    
T  9137781 agtttcatgatcatgaatgcgtctcgcatgatcttacaatattaaattcaattttgaaatcctttcaatcaattcaagaattttgacattataatattga 9137682  T
Q  205 tataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaat 301  Q
    ||||||| | |||||| |||| |  ||||||||  |||||||||||     |   ||| | ||||||||||||||||||||||||||||||||| |||||    
T  9137681 tataattaattttttttgaaccttagaaagacaagattaagattaa-----tacataggctcattttcaactaaaatataatttgttttgttatgaaaat 9137587  T
Q  302 tatcc-caatttct 314  Q
    ||||| ||||||||    
T  9137586 tatccacaatttct 9137573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 23232178 - 23232289
Alignment:
Q  206 ataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgtttt-gttataaaatt 302  Q
    |||||||||||||||||||||| ||||||| ||  |||| ||||||||| | ||||| | ||||||||| ||||||||||||| |||| |||||||| ||    
T  23232178 ataatttaattttttggaacatttgaaagaaaagattaaaattaatttcttcagtaggctcattttcaattaaaatataatttattttggttataaagtt 23232277  T
Q  303 atcccaatttct 314  Q
    |||| |||||||    
T  23232278 atcctaatttct 23232289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 28509367 - 28509292
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    ||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||    
T  28509367 attaagattaatttttctagtaggcccattttcaactaaaatataatttgttttgttatgaaaattctcctaattt 28509292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 23232093 - 23232179
Alignment:
Q  78 cacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaat 164  Q
    ||||||||| ||||||| | | ||||| |||| ||||||||||||| || ||| |||||| || |||||||||||||||||||||||    
T  23232093 cacatgatcctaaatgcgtctcacatcggttttatgatcatgaatgtgtttcacatgattctgcattatcaaattcaattttgcaat 23232179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 45117555 - 45117505
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  45117555 attttcaactaaaatataatttgctttgttatgaaaattatcccaatttct 45117505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 7972993 - 7973046
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  7972993 cccattttcaactaaaatagaatttgctttgttatgaaaattatcccaatttct 7973046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 312
Target Start/End: Original strand, 2879149 - 2879280
Alignment:
Q  184 aagtttacattactatattgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatat 281  Q
    ||||||| |||||||||||||||||||| | || ||| | | |  | |||| |||  |||||||||||||   |||||| ||||||||| ||||||||||    
T  2879149 aagtttatattactatattgatataattaatttattttggatactttaaaggcaagattaagattaatttttctagtaggcccattttctactaaaatat 2879248  T
Q  282 aatttgttttgttat-aaaattatcccaattt 312  Q
     |||||||||||||| || ||| |||||||||    
T  2879249 tatttgttttgttatgaagattctcccaattt 2879280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 6927561 - 6927609
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||    
T  6927561 attttcaactaaaatataatttgttttgttatgaaaattctcccaattt 6927609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 4432086 - 4432137
Alignment:
Q  264 cattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  4432086 cattttcaactaaaataaaatttgctttgttatgaaaattatcccaatttct 4432137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 1981685 - 1981635
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  1981685 attttcaactaaaatagaatttgctttgttatgaaaattatcccaatttct 1981635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 3762786 - 3762736
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  3762786 attttcaactaaaatagaatttgctttgttatgaaaattatcccaatttct 3762736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 31597611 - 31597561
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  31597611 attttcaactaaaatagaatttgctttgttatgaaaattatcccaatttct 31597561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 16729822 - 16729769
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgtt-ataaaattatcccaatttct 314  Q
    ||||||||||||||||||| |||||| |||||| | ||||||||||||||||||    
T  16729822 cccattttcaactaaaatagaatttgctttgttaagaaaattatcccaatttct 16729769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 24682904 - 24682815
Alignment:
Q  78 cacatgatcataaatgcatttgacatca-gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatcc 166  Q
    ||||||||| ||||||||| | |||||  |||||||||||||||||| ||||   || || ||| |||||||||||||||| ||||||||    
T  24682904 cacatgatcctaaatgcatgtcacatcgtgtttcatgatcatgaatgtgtcttgcatcatcttgcattatcaaattcaattctgcaatcc 24682815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 39906339 - 39906288
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    ||||||||||||||||||| |||||| |||||||| |||||||| |||||||    
T  39906339 cccattttcaactaaaatagaatttgctttgttataaaaattattccaattt 39906288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 961164 - 961250
Alignment:
Q  78 cacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaat 164  Q
    |||||| || || |||||| | ||||| ||||||||||||  |||||||| || ||  | |||||||||||||||||||| ||||||    
T  961164 cacatggtcctacatgcatctcacatcggtttcatgatcacaaatgcgtcccacatattcttgtattatcaaattcaattatgcaat 961250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 32073349 - 32073297
Alignment:
Q  263 ccattttcaactaaaatataatttgttttgttataaa-attatcccaatttct 314  Q
    ||||||||||||||||||||||| ||||||||  ||| |||||| ||||||||    
T  32073349 ccattttcaactaaaatataattcgttttgttgcaaagattatcacaatttct 32073297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 78 - 314
Target Start/End: Original strand, 13597701 - 13597939
Alignment:
Q  78 cacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaat 177  Q
    |||||| || ||||||| | | |||||||||||||||||||||||| |||||  ||||||||| ||||||||||| |||||||||||||||||||  |||    
T  13597701 cacatgttcctaaatgcgtctcacatcagtttcatgatcatgaatgtgtctcgcatgattttgcattatcaaatttaattttgcaatccttttaatcaat 13597800  T
Q  178 tcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaacta 275  Q
    | ||  ||| | | ||||||||| | |||||||| ||||||||||| | | | || ||||  ||||| ||||||||  |||||||   ||||||||||||    
T  13597801 ttaaaaaagatgaaattactataatcatataattaaattttttggatcctttaaatgacaagattaatattaatttgcttagtaggttcattttcaacta 13597900  T
Q  276 aaatataatttgttttgttataaaattatcccaatttct 314  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  13597901 aaatataatttgttttgttataaaattatcccattttct 13597939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 78 - 314
Target Start/End: Original strand, 19091010 - 19091248
Alignment:
Q  78 cacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaat 177  Q
    ||||||||| ||||||| | |  |||| ||||||||| | |||||||| |||  ||||| ||| |||||||||||||||||| ||||||||| ||  |||    
T  19091010 cacatgatcctaaatgcgtctcgcatcggtttcatgaacgtgaatgcgactcgcatgatcttgcattatcaaattcaatttttcaatcctttcaatcaat 19091109  T
Q  178 tcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaacta 275  Q
    ||| | || || ||||||||||||||||||||||| |||||||| ||| | ||||||| |  |||||||||||||||  |||||| ||||||||||||||    
T  19091110 tcatgaaatttgacattactatattgatataattt-attttttgaaacctttgaaagataagattaagattaatttctctagtaggcccattttcaacta 19091208  T
Q  276 aaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||||| |||||||| | |||||||    
T  19091209 aaatataatttgttttgttatgaaaattatacaaatttct 19091248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 30387053 - 30386893
Alignment:
Q  156 ttttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--attaagattaatttcg 253  Q
    |||||||||||||| ||  |||||||| ||||| |||||||||||||||||||||||||||||||||||| | | |||||||  ||||||||||||||      
T  30387053 ttttgcaatcctttcaatgaattcaagaaagttgacattactatattgatataatttaattttttggaacctttaaaagacaagattaagattaatttat 30386954  T
Q  254 ttagtagacccattttcaactaaaatataatttgttttgttataaaattatcccaatttct 314  Q
     |||||  |||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  30386953 ctagtaagcccatttttaactaaaatataatttgttttgttataaaattatcctaatttct 30386893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 312
Target Start/End: Original strand, 41302278 - 41302510
Alignment:
Q  81 atgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattca 180  Q
    |||||||| ||| ||| | |||||||||||||||||||||||| ||||| |||||| ||||| ||| |||||||||||| ||||||||| ||  ||||||    
T  41302278 atgatcattaatacatctcacatcagtttcatgatcatgaatgtgtctcgtatgatcttgtaatattaaattcaattttacaatcctttcaatcaattca 41302377  T
Q  181 agtaagttt-acattactatattgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagaccca-ttttcaactaa 276  Q
    |  || ||| ||||| | |||||||||||||||| ||||||||||  |  ||||||||  |||||||| ||||||    |||| | || |||| ||||||    
T  41302378 ataaaatttgacattgcgatattgatataatttatttttttggaatcttagaaagacaagattaagatcaatttc----gtaggctcatttttgaactaa 41302473  T
Q  277 aatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||||||| ||||||||||||||||    
T  41302474 aatataatttgttttgttatgaaaattatcccaattt 41302510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 238
Target Start/End: Original strand, 31548989 - 31549149
Alignment:
Q  78 cacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaat 177  Q
    ||||||||| ||||||| | | ||||| |||||||||||| ||||| || ||  |||||| || |||||||||||||||||||||||| ||||||  |||    
T  31548989 cacatgatcctaaatgcgtcttacatcggtttcatgatcacgaatgtgtttcgcatgattgtgcattatcaaattcaattttgcaatctttttaatcaat 31549088  T
Q  178 tcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagacaa 238  Q
    ||||  ||||| ||||||||||| |||||||||||||||||||||||| | ||||| ||||    
T  31549089 tcaaaaaagttgacattactataatgatataatttaattttttggaacctttgaaaaacaa 31549149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 119 - 311
Target Start/End: Complemental strand, 14904261 - 14904066
Alignment:
Q  119 gaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaatttt 218  Q
    ||||| |||||  ||||| ||| ||||||||||||||   ||||||||||| ||  |||||||| ||||| |||||||||||||||| ||||||| ||||    
T  14904261 gaatgtgtctcgcatgatcttgcattatcaaattcaaccatgcaatcctttcaatcaattcaagaaagttgacattactatattgatgtaatttattttt 14904162  T
Q  219 ttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaatt 311  Q
    ||| ||| | |||||||||  ||||| ||||||||   ||||||  | ||||||||||||||||||||||||||||| || |||||||||| ||||    
T  14904161 ttgtaacctttgaaagacaagattaaaattaatttttctagtaggtctattttcaactaaaatataatttgttttgtcatgaaaattatcctaatt 14904066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 100 - 292
Target Start/End: Original strand, 11199133 - 11199327
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactat 199  Q
    ||||| ||||||| || |||| || || ||| ||||| ||| |||||||||||||||| | ||||||||| ||  ||| |||| || || ||||||||||    
T  11199133 acatcggtttcataatgatgagtgtgtttcacatgatcttgaattatcaaattcaattctacaatcctttcaatcaatacaagaaaattgacattactat 11199232  T
Q  200 attgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttg 292  Q
    |||||||| ||||| ||||||| ||  | ||||| |||  |||||||||||||||  |||||  ||||||||||||||||||| |||||||||||    
T  11199233 attgatatgatttatttttttgaaatctttgaaaaacaagattaagattaatttctctagtatgcccattttcaactaaaatagaatttgttttg 11199327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 116 - 292
Target Start/End: Complemental strand, 25621678 - 25621500
Alignment:
Q  116 catgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaat 215  Q
    |||||||| |||||  ||||| ||| |||||||||||||| | |||||| |||| ||  |||||||| ||||| |||||||||| || |||||||||| |    
T  25621678 catgaatgtgtctcgcatgatcttgcattatcaaattcaactatgcaattctttcaatcaattcaagaaagttgacattactatttttatataatttatt 25621579  T
Q  216 tttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttg 292  Q
    |||||| ||| | | |||||||  ||||||||||||||   | ||||  ||||||||||||||||||||||||||||||    
T  25621578 tttttgaaacctttaaaagacaagattaagattaatttatcttgtaggtccattttcaactaaaatataatttgttttg 25621500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 142 - 314
Target Start/End: Complemental strand, 10023124 - 10022949
Alignment:
Q  142 attatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--at 239  Q
    ||||||||||||||||  |||||| ||| |   |||||||| ||||| |||||| ||||| ||||||||||  ||||||| ||| | | |||||||  ||    
T  10023124 attatcaaattcaattacgcaatcatttcattcaattcaagaaagttgacattattatatagatataatttgtttttttgaaacctttaaaagacatgat 10023025  T
Q  240 taagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||  ||||| | ||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  10023024 taagattaatttctctagtaaaaccactttcaactaaaatatattttgttttgttatgaaaattatctcaatttct 10022949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 296
Target Start/End: Complemental strand, 24484729 - 24484534
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactat 199  Q
    ||||| ||||||| || |||||||||||||   |||| ||| | ||||||||||||||||||||| |||| ||| |||||||| || || ||||||| ||    
T  24484729 acatcggtttcattattatgaatgcgtctcgcttgatcttgcaatatcaaattcaattttgcaatgctttcaaccaattcaagaaatttgacattacaat 24484630  T
Q  200 attgatataatt---taattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgtt 294  Q
    ||||||||||||   |||||||||  |||  | ||||||||  |||||||||||||| |||    | | |||||||||||||||||||||||||||||||    
T  24484629 attgatataatttagtaatttttt--aaccacagaaagacaagattaagattaattttgtt----gcctcattttcaactaaaatataatttgttttgtt 24484536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 193 - 314
Target Start/End: Complemental strand, 9057561 - 9057439
Alignment:
Q  193 ttactatattgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttt 290  Q
    |||| ||| |||||||||||||||||||||||| | |||||||||  |||||||||||||||  ||||| ||  || ||||| |||||||||||||||||    
T  9057561 ttaccataatgatataatttaattttttggaacctttgaaagacaatattaagattaatttctctagtaaacttatattcaattaaaatataatttgttt 9057462  T
Q  291 tgttataaaattatcccaatttct 314  Q
    || |||||||||||| ||||||||    
T  9057461 tg-tataaaattatctcaatttct 9057439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 106 - 296
Target Start/End: Original strand, 38422792 - 38422982
Alignment:
Q  106 gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgat 205  Q
    |||||| ||||||||||| |||||| ||||| ||| |||||||||||||||| | | ||||||| ||  ||| |||| || || ||| ||||||||||||    
T  38422792 gtttcacgatcatgaatgtgtctcacatgatcttgcattatcaaattcaattctacgatcctttcaatcaatccaagaaaattgacactactatattgat 38422891  T
Q  206 ataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat 296  Q
    ||||||| |||||||||| | ||| ||||| |  ||| ||||| |||||   ||||  | |||||||||||||||||| ||||||||||||||    
T  38422892 ataattt-attttttggatcctct-aaagaaaagattgagatttatttctcaagtatgctcattttcaactaaaatatcatttgttttgttat 38422982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 314
Target Start/End: Complemental strand, 6883249 - 6883037
Alignment:
Q  106 gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgat 205  Q
    |||||||||||| ||||| ||||||  |||| ||  || ||||||||||||| |  |||||||| ||  |||||||| ||||| |||||||||||| |||    
T  6883249 gtttcatgatcaagaatgtgtctcacgtgatcttccataatcaaattcaattctagaatcctttcaatcaattcaagaaagttgacattactatatcgat 6883150  T
Q  206 ataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataa--tttgttttgttat-aaaa 300  Q
     |||||| |||||||||||| | | ||| |||  |||||||||||||||   ||||| |   ||||||||||||||||||  ||| ||||||||| ||||    
T  6883149 gtaattt-attttttggaacctttaaaaaacaagattaagattaatttctcaagtaggcatgttttcaactaaaatataattttttttttgttatgaaaa 6883051  T
Q  301 ttatcccaatttct 314  Q
    ||||| ||||||||    
T  6883050 ttatctcaatttct 6883037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 7880347 - 7880422
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  7880347 attaagattaatttctctagtaggcccattttcaactaaaatataatttgttttgttatgaaaattctcccaattt 7880422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 19678135 - 19678060
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||    
T  19678135 attaagattaatttctctagtagacccattttcaactaaaatataatttgttttgttatgagaattctcccaattt 19678060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 314
Target Start/End: Original strand, 38566113 - 38566264
Alignment:
Q  158 ttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgtt 255  Q
    |||||||||||| ||  |||||||| || || ||||||| |||||||||||||||   |||||| ||| |  |||||||||  |||||||||||||| |     
T  38566113 ttgcaatcctttcaatcaattcaagaaatttgacattacaatattgatataattt---tttttgaaaccttagaaagacaagattaagattaatttcct- 38566208  T
Q  256 agtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
       || | ||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  38566209 ---aggctcattt-caactaaaatataatttgttttgttatgaaaattatcccaatttct 38566264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 29303283 - 29303227
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgtt 294  Q
    |||||||||||||||  |||||| |||||||||||||||||||||||||||||||||    
T  29303283 attaagattaatttctctagtaggcccattttcaactaaaatataatttgttttgtt 29303227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 2565729 - 2565653
Alignment:
Q  237 aattaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||   |||||| ||||||||| |||||||||| |||||||||||||| || ||| |||||||||    
T  2565729 aattaagattaatttttctagtaggcccattttctactaaaatattatttgttttgttatgaagattctcccaattt 2565653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 312
Target Start/End: Original strand, 18781114 - 18781245
Alignment:
Q  184 aagtttacattactatattgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatat 281  Q
    ||||||| |||||||||||||||||||| | || ||| | | |  | |||| |||  |||||||||||||   |||||| ||||||||| ||||||||||    
T  18781114 aagtttatattactatattgatataattaatttattttggatactttaaaggcaagattaagattaatttttctagtaggcccattttctactaaaatat 18781213  T
Q  282 aatttgttttgttat-aaaattatcccaattt 312  Q
     |||||||||||||| || ||| |||||||||    
T  18781214 tatttgttttgttatgaagattctcccaattt 18781245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 25416049 - 25416117
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatc 305  Q
    |||||||||||||||  || |||  ||||||||||||||||||||||||| |||||||| |||||||||    
T  25416049 attaagattaatttctctaataggtccattttcaactaaaatataatttgctttgttatcaaaattatc 25416117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 45277506 - 45277554
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||    
T  45277506 attttcaactaaaatataatttgttttgttatgaaaattctcccaattt 45277554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 22575996 - 22576047
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||||    
T  22575996 cccattttcaactaaaatagaatttgctttgttatgaaaattatcccaattt 22576047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 41422863 - 41422914
Alignment:
Q  264 cattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||||||    
T  41422863 cattttcaactaaaatataatttattttgttatgaaaattattccaatttct 41422914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 27861833 - 27861886
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||| |||||| |||||||| |||||||| |||||||||    
T  27861833 cccattttcaactaaaatagaatttgctttgttatgaaaattattccaatttct 27861886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 33054862 - 33054821
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatc 305  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  33054862 attttcaactaaaatataatttgttttgttatgaaaattatc 33054821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 296
Target Start/End: Original strand, 90261 - 90375
Alignment:
Q  184 aagtttacattactatattgatataatttaattttttggaacatctgaaagacaat--taagattaatttcgttagtagacccattttcaactaaaatat 281  Q
    ||||||| |||||||||||||||||||| | || ||| | | |  | |||| ||||  ||||||||||||   || ||| ||||||||||||||||||||    
T  90261 aagtttatattactatattgatataattaatttattttggatactttaaaggcaatattaagattaatttttctaataggcccattttcaactaaaatat 90360  T
Q  282 aatttgttttgttat 296  Q
     ||| ||||||||||    
T  90361 tattcgttttgttat 90375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 43673132 - 43673191
Alignment:
Q  106 gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatc 165  Q
    |||||||||||| ||||| |||| | ||||| ||| ||||||||||||||||||| ||||    
T  43673132 gtttcatgatcaagaatgtgtcttacatgatcttgcattatcaaattcaattttgtaatc 43673191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 44314058 - 44314108
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||| ||||||||    
T  44314058 attttcaactaaaatagaatttgctttgttatgaaaattatctcaatttct 44314108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 44322237 - 44322287
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||| ||||||||    
T  44322237 attttcaactaaaatagaatttgctttgttatgaaaattatctcaatttct 44322287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 41825976 - 41826029
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||| ||||||| |||||||||||| || ||||||||| ||||||||    
T  41825976 cccattttcaaataaaatagaatttgttttgtaatgaaaattatctcaatttct 41826029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 9425108 - 9425172
Alignment:
Q  159 tgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttgga 223  Q
    ||||||||||| ||| ||| | || ||||| ||||||||||||| |||| ||||| |||||||||    
T  9425108 tgcaatcctttcaaccaatccgagaaagttgacattactatattaatattatttatttttttgga 9425172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 33015208 - 33015256
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||| |||||| |||||||| ||||||||||| ||||    
T  33015208 attttcaactaaaatagaatttgctttgttatgaaaattatccccattt 33015256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 42 - 314
Target Start/End: Complemental strand, 40934362 - 40934088
Alignment:
Q  42 aaaaaataacaacaaaacataagaagcggagtggctcacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgt 141  Q
    |||||| |||||||||||| || |||  |||||   ||||| ||  ||||||||  | |||||  |||||||||||| ||||| ||||  || ||||||     
T  40934362 aaaaaagaacaacaaaacaaaaaaagatgagtgagccacattattctaaatgcacctcacatctatttcatgatcataaatgcatctcgcataattttgc 40934263  T
Q  142 attatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--at 239  Q
    |||||||||| |||||||| |||  ||||||  |||| ||| ||||| ||||||||||| ||||||||||| |||||||| ||| | |||||||||  ||    
T  40934262 attatcaaatccaattttgaaatttttttaatcaattgaagaaagttgacattactataatgatataatttcattttttgtaacctttgaaagacaagat 40934163  T
Q  240 taagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttataaaattatcccaatttct 314  Q
    |||||||||||||   |||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  40934162 taagattaatttctccagtatacccaatttcaactaaaacataatttgttttgttataaaattatccaaatttct 40934088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 106 - 314
Target Start/End: Complemental strand, 9420705 - 9420494
Alignment:
Q  106 gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgat 205  Q
    ||||||||||||||||||| ||||  ||||| ||| ||||| |||||||||| ||||||| ||||||  |||||||| ||||| ||||||||| ||||||    
T  9420705 gtttcatgatcatgaatgcctctcgcatgatcttgcattattaaattcaattctgcaatctttttaatcaattcaagaaagttgacattactacattgat 9420606  T
Q  206 ataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaatt 302  Q
    |||||||| ||||||||||  | | |||||||  |||||||||| ||||  ||| | || ||||||||||||||||| ||||| ||||||||| |||||     
T  9420605 ataatttatttttttggaatctttaaaagacaagattaagattattttctctaggaaactcattttcaactaaaataaaatttattttgttatgaaaata 9420506  T
Q  303 atcccaatttct 314  Q
    |||| |||||||    
T  9420505 atcctaatttct 9420494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 107 - 314
Target Start/End: Complemental strand, 21863847 - 21863638
Alignment:
Q  107 tttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgata 206  Q
    ||||||| ||| ||||| |||||  ||||| ||| |||||||||||||||||||||||| ||| ||  |||||||  ||||| |||||||| |||| |||    
T  21863847 tttcatggtcaagaatgtgtctcgcatgatcttggattatcaaattcaattttgcaatcatttcaatcaattcaaaaaagttgacattactttattaata 21863748  T
Q  207 taatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaatta 303  Q
    |||||| |||||||||||  | |||| ||||  |||||||||||||||  || | |  ||||||||||||||||||||||||| |||||||| |||||||    
T  21863747 taattt-attttttggaatctttgaaggacatgattaagattaatttctctacttggtccattttcaactaaaatataatttgctttgttatgaaaatta 21863649  T
Q  304 tcccaatttct 314  Q
    || ||||||||    
T  21863648 tctcaatttct 21863638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 132 - 299
Target Start/End: Original strand, 45445949 - 45446117
Alignment:
Q  132 atgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctga 231  Q
    ||||| ||| |||||||||||||||| | ||||| |||||| |||||| || ||| | |||||||||||||||||||||||  ||||||||||| | |||    
T  45445949 atgatcttgcattatcaaattcaattctacaatctttttaattaattcgagaaagctaacattactatattgatataattt-tttttttggaacctttga 45446047  T
Q  232 aagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttataaa 299  Q
    |||| |  ||||| |||||||||  |||||| || ||||||||||||||||||||||||||| |||||||    
T  45446048 aagaaaagattaaaattaatttctctagtaggccaattttcaactaaaatataatttgttttcttataaa 45446117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 291
Target Start/End: Complemental strand, 5771141 - 5770933
Alignment:
Q  81 atgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattca 180  Q
    |||||||| ||||||| | ||||||||||||||||||||||||| | ||  ||||| ||| | ||  ||||||| |||||||||||||| ||  ||||||    
T  5771141 atgatcatgaatgcatctcacatcagtttcatgatcatgaatgcatgtcgcatgatcttgcaatactaaattcatttttgcaatcctttcaatcaattca 5771042  T
Q  181 agtaagtttacattactatattgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaa 278  Q
    || || || ||||||| |||||||||||||||| | ||||||||  |  |||||||||  |||| |||||||||||    || | |||||||||||||||    
T  5771041 agaaatttgacattacaatattgatataatttactcttttggaaacttagaaagacaagattaatattaatttcgt----aggctcattttcaactaaaa 5770946  T
Q  279 tataatttgtttt 291  Q
    |||||||| ||||    
T  5770945 tataatttatttt 5770933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 156 - 306
Target Start/End: Original strand, 28460145 - 28460299
Alignment:
Q  156 ttttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaa--ttttttggaacatctgaaagaca--attaagattaattt 251  Q
    ||||||||||||||  |  |||||||| ||||| ||||| |||||||||||||||||||  ||||||||||| | | |||||||  ||||| ||||||||    
T  28460145 ttttgcaatcctttcgatcaattcaagaaagttgacattgctatattgatataatttaattttttttggaacctttaaaagacaatattaaaattaattt 28460244  T
Q  252 cgttagtagacccattttcaactaaaatataatttgttttgttataaaattatcc 306  Q
       |||||  |||||||||||||||||||| ||||||||||||| ||||||||||    
T  28460245 ttctagtaagcccattttcaactaaaatatcatttgttttgttaaaaaattatcc 28460299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 43179378 - 43179489
Alignment:
Q  205 tataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttataaaatt 302  Q
    |||||||||||||||  |||| | ||||||| ||  |||||||||||||  ||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  43179378 tataatttaatttttgagaacctttgaaagataagattaagattaatttttttaatagactcatttttaactaaaatataatttgttttgttataaaatt 43179477  T
Q  303 atcccaatttct 314  Q
    ||||||||||||    
T  43179478 atcccaatttct 43179489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 35118198 - 35118300
Alignment:
Q  202 tgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttataaa 299  Q
    ||||||| |||||||||||||||| | ||||||||||  || ||||||||||  ||||||| |  |||||||||||||||||||||||||||||||||||    
T  35118198 tgatatagtttaattttttggaacctttgaaagacaacattcagattaatttttttagtaggcttattttcaactaaaatataatttgttttgttataaa 35118297  T
Q  300 att 302  Q
    |||    
T  35118298 att 35118300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 289
Target Start/End: Original strand, 8113779 - 8113954
Alignment:
Q  116 catgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaat 215  Q
    |||||||| |||||  ||||| ||  |||||||||||||| | ||||||||||| ||  ||||| || || || ||||||||||||| || ||||||| |    
T  8113779 catgaatgtgtctcgcatgatcttccattatcaaattcaactatgcaatcctttcaatcaattcgagaaaattgacattactatattaatgtaatttatt 8113878  T
Q  216 tttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgtt 289  Q
    ||||| |||| | ||||||| |  |||||||||||| ||  ||||||    |||||||||||||||||||||||||    
T  8113879 tttttagaacctttgaaagaaaatattaagattaatatctgtagtaggtttattttcaactaaaatataatttgtt 8113954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 8069687 - 8069612
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| | |||| |||||||||    
T  8069687 attaagattaatttctctagtaggcccattttcaactaaaatataatttgttttgttatgagaattctcccaattt 8069612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 48636809 - 48636734
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||||||    
T  48636809 attaagattaatttcttcagtaggcccattttcaactaaaatataatttgtttggttatgaaaattctcccaattt 48636734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 39038847 - 39038956
Alignment:
Q  208 aatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgtta-taaaattat 304  Q
    |||||||||||||| ||| | | | ||||||  |||||||||||||   |||||| |||||||| |||||||||||||||||||||||||  ||||||||    
T  39038847 aatttaattttttgaaacctttaacagacaagattaagattaatttatctagtaggcccatttttaactaaaatataatttgttttgttacgaaaattat 39038946  T
Q  305 cccaatttct 314  Q
    ||||||||||    
T  39038947 cccaatttct 39038956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 300
Target Start/End: Original strand, 8604521 - 8604647
Alignment:
Q  175 aattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaa 272  Q
    |||||||| || || |||||||| ||||||| ||||||||||||||||||| | |||||||||  ||||||||||| ||   ||||||  | ||||||||    
T  8604521 aattcaagaaatttgacattact-tattgatgtaatttaattttttggaacctttgaaagacaagattaagattaacttatctagtaggtcaattttcaa 8604619  T
Q  273 ctaaaatataatttgttttgttataaaa 300  Q
     ||||||||||||| ||| |||||||||    
T  8604620 ataaaatataatttatttagttataaaa 8604647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 48238566 - 48238491
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    ||||||||| |||||  |||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||    
T  48238566 attaagatttatttctctagtaggcccattttcaactaaaatataatttgttttgttatgaaaattcttccaattt 48238491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 44733889 - 44733783
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactat 199  Q
    |||||| |||||| || || |||| || ||| ||||| ||  |||||||||||||| ||||||||||||| ||  |||||||  ||||||||||||||||    
T  44733889 acatcaatttcataatgataaatgtgtgtcacatgatcttacattatcaaattcaaatttgcaatcctttcaatcaattcaaaaaagtttacattactat 44733790  T
Q  200 attgata 206  Q
    |||||||    
T  44733789 attgata 44733783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 6189391 - 6189448
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgtta 295  Q
    |||||||||||||||  |||||  ||||||||||||||||||||||||||||||||||    
T  6189391 attaagattaatttctctagtatgcccattttcaactaaaatataatttgttttgtta 6189448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 3123848 - 3123950
Alignment:
Q  106 gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgat 205  Q
    ||||||| || |||||| ||| ||| | ||| ||| |||||||||||||||| |||||||||||  |  || ||||| ||||| ||||||||||||||||    
T  3123848 gtttcataatgatgaatacgtttcacaagatcttgcattatcaaattcaattatgcaatcctttccatcaactcaagaaagttgacattactatattgat 3123947  T
Q  206 ata 208  Q
    |||    
T  3123948 ata 3123950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 29636904 - 29636954
Alignment:
Q  263 ccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  29636904 ccattttcaactaaaatataatttgttttgttttgaaaattatcccaattt 29636954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 24441941 - 24441990
Alignment:
Q  264 cattttcaactaaaatataatttgttttgtta-taaaattatcccaattt 312  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  24441941 cattttcaacaaaaatataatttgttttgttattaaaattatcccaattt 24441990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 39038749 - 39038837
Alignment:
Q  77 tcacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatc 165  Q
    |||||||||| ||||||  | | |||||||||||||||||| ||||  |||||  ||||| ||| |||||||||||||||| |||||||    
T  39038749 tcacatgatcctaaatgtgtctcacatcagtttcatgatcaagaatatgtctcgcatgatcttgcattatcaaattcaattctgcaatc 39038837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 36628683 - 36628593
Alignment:
Q  130 atatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaatttttt 220  Q
    ||||||| ||| |||||||||||||||| ||||||| ||||||  |||  ||| ||||| ||| || |||||| |||||||||| ||||||    
T  36628683 atatgatcttgcattatcaaattcaattctgcaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttttt 36628593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 20394797 - 20394850
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||| |||||||||| |||||| |||||||| ||||||||||||||||||    
T  20394797 cccattttgaactaaaatagaatttgctttgttatgaaaattatcccaatttct 20394850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 19311928 - 19311986
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat 296  Q
    ||||||||||||||   || ||| |||||||||||||||||||| ||| ||||||||||    
T  19311928 attaagattaatttttctaataggcccattttcaactaaaatattattcgttttgttat 19311986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 31072539 - 31072589
Alignment:
Q  265 attttcaactaaaatataatttgttttgtta-taaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||||||||    
T  31072539 attttcaactaaaatagaatttgctttgttacgaaaattatcccaatttct 31072589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 77 - 314
Target Start/End: Original strand, 10373195 - 10373436
Alignment:
Q  77 tcacatgatcataaatgcatttgacatcagtttcat-gatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaacta 175  Q
    |||||| ||| ||||||||| | | ||||||||||  |||||||||| ||||||  ||||||||| ||||| |||||||||||||||||||||| ||  |    
T  10373195 tcacattatcctaaatgcatctcatatcagtttcaacgatcatgaatacgtctcgcatgattttgcattattaaattcaattttgcaatcctttaaatca 10373294  T
Q  176 attcaagtaagtttacattactatattgatataatttaa-ttttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaa 272  Q
    ||||||| ||||| |||||| |||| ||||||||||||| ||||||||||  | | || ||||  ||||| ||||||||   ||||||  ||||||||||    
T  10373295 attcaagaaagttgacattattataatgatataatttaatttttttggaagctttaaatgacaagattaaaattaatttttctagtaggtccattttcaa 10373394  T
Q  273 ctaaaatataatttgttttgttataaaattatcccaatttct 314  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  10373395 ctaaaatataatttgttttattataaaattatctcaatttct 10373436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 106 - 314
Target Start/End: Original strand, 41509049 - 41509258
Alignment:
Q  106 gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgat 205  Q
    ||||||||||| ||||   |||||  ||||||||  ||||||||||||||||||| |||| |||||| ||||||||| ||||| ||||||||||  ||||    
T  41509049 gtttcatgatcgtgaacatgtctcgcatgattttccattatcaaattcaattttgtaatcattttaa-taattcaagaaagttgacattactattatgat 41509147  T
Q  206 ataatttaattttttggaacatctgaaa--gacaattaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttataaaatta 303  Q
    |||||||||||||||||||| | |||||  ||| |||||||||||||||  || ||| |  |||||||||||||||||||||||||| |||||||||||     
T  41509148 ataatttaattttttggaacctttgaaaaagaccattaagattaatttctctaataggcagattttcaactaaaatataatttgtttagttataaaattg 41509247  T
Q  304 tcccaatttct 314  Q
    || ||||||||    
T  41509248 tctcaatttct 41509258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 106 - 314
Target Start/End: Complemental strand, 52459266 - 52459055
Alignment:
Q  106 gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgat 205  Q
    ||||||| || || |||| || ||| ||||| ||| |||||||||||||||| |||||||||||  |  || ||||| ||||| |||||||| |||||||    
T  52459266 gtttcataatgataaatgtgtttcacatgatcttgcattatcaaattcaattctgcaatcctttctataaagtcaagaaagttgacattactgtattgat 52459167  T
Q  206 ataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaatt 302  Q
    |||||||| ||||||||||  | ||||||||||  ||||| ||||||||  | |||| ||||||||||||||||||| ||||||||||||||| |||| |    
T  52459166 ataatttatttttttggaatctttgaaagacaagattaaggttaatttctctggtaggcccattttcaactaaaatagaatttgttttgttatgaaaaat 52459067  T
Q  303 atcccaatttct 314  Q
    ||||||||||||    
T  52459066 atcccaatttct 52459055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 106 - 314
Target Start/End: Complemental strand, 52460523 - 52460312
Alignment:
Q  106 gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgat 205  Q
    ||||||| || || |||| || ||| ||||| ||| |||||||||||||||| |||||||||||  |  || ||||| ||||| |||||||| |||||||    
T  52460523 gtttcataatgataaatgtgtttcacatgatcttgcattatcaaattcaattctgcaatcctttctataaagtcaagaaagttgacattactgtattgat 52460424  T
Q  206 ataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaatt 302  Q
    |||||||| ||||||||||  | ||||||||||  ||||| ||||||||  | |||| ||||||||||||||||||| ||||||||||||||| |||| |    
T  52460423 ataatttatttttttggaatctttgaaagacaagattaaggttaatttctctggtaggcccattttcaactaaaatagaatttgttttgttatgaaaaat 52460324  T
Q  303 atcccaatttct 314  Q
    ||||||||||||    
T  52460323 atcccaatttct 52460312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 312
Target Start/End: Complemental strand, 21320212 - 21320054
Alignment:
Q  156 ttttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcg 253  Q
    |||| ||||||||| ||  |||||||| ||||| |||||||||||||| ||||||||||||||||||||| | ||||| | ||  |||||||||||||      
T  21320212 tttttcaatcctttcaatcaattcaagaaagttgacattactatattggtataatttaattttttggaacctttgaaaaataagattaagattaatttat 21320113  T
Q  254 ttagtagacccattttcaactaaaatataatttgttttgttataaaattatcccaattt 312  Q
     |||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21320112 ctagtaagcccattttcaactaaaatataatttgttttgttataaaattatcctaattt 21320054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 107 - 314
Target Start/End: Original strand, 1843017 - 1843223
Alignment:
Q  107 tttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgata 206  Q
    |||||||||| ||||||||||||  ||||| ||| | ||||| ||||||||||||| || ||| ||  |||||||| ||||| ||||||| ||||| |||    
T  1843017 tttcatgatcttgaatgcgtctcgcatgatcttgcaatatcatattcaattttgcagtcttttcaatcaattcaagaaagttgacattacaatatttata 1843116  T
Q  207 taatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaatta 303  Q
    ||||||| ||||||||||| |  ||||||||  |||||||||||||||     ||| | |||||||||| |||||||||||||||||||||| |||||||    
T  1843117 taatttatttttttggaaccttagaaagacaagattaagattaatttc----ataggctcattttcaacaaaaatataatttgttttgttatgaaaatta 1843212  T
Q  304 tcccaatttct 314  Q
    |||||||||||    
T  1843213 tcccaatttct 1843223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 116 - 312
Target Start/End: Complemental strand, 10142383 - 10142184
Alignment:
Q  116 catgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaat 215  Q
    |||||||| |||||  ||||| ||| ||||| ||| |||| |  ||||| |||| ||  |||||||| ||||| |||||||||||||||| ||||||| |    
T  10142383 catgaatgtgtctcccatgatcttggattattaaaatcaactacgcaattctttcaatcaattcaagaaagttgacattactatattgatgtaatttatt 10142284  T
Q  216 tttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||| ||| | | ||||| ||  ||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10142283 tttttgcaacctttaaaagataagattaagattaatttctctagtagacccattttcaagtaaaatataatttgttttgttatgaaaattatcccaattt 10142184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 100 - 314
Target Start/End: Original strand, 24611199 - 24611416
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactat 199  Q
    ||||| ||||||  || ||||||| || ||| ||||| ||  |||||||||||||||| |||||||| || ||  |||||||| ||||| ||| ||||||    
T  24611199 acatcggtttcacaatgatgaatgtgtgtcacatgatcttccattatcaaattcaattctgcaatcccttcaatcaattcaagaaagttgacaatactat 24611298  T
Q  200 attgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat- 296  Q
    ||| ||| |||||| ||||||||||  | |||||||||  |||||| |||||||   |||||| || |||||||||||||||| |||||||||||||||     
T  24611299 attaataaaatttatttttttggaatctttgaaagacaagattaaggttaatttttctagtaggccaattttcaactaaaatagaatttgttttgttatg 24611398  T
Q  297 aaaattatcccaatttct 314  Q
    ||||||||| ||||||||    
T  24611399 aaaattatctcaatttct 24611416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 100 - 314
Target Start/End: Original strand, 9921704 - 9921916
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactat 199  Q
    ||||| ||||||||||| |||||  |||||  ||||| ||| | ||||| ||||||||||| |||||||| ||  |||||||  ||||||||||||| ||    
T  9921704 acatcggtttcatgatcttgaatatgtctcgcatgatcttgcaatatcatattcaattttgaaatcctttaaatcaattcaaa-aagtttacattacaat 9921802  T
Q  200 attgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgtta-t 296  Q
    |||||||||||||| | ||||| ||| |  ||||||||  |||||||||||||||     ||| | |||||||||||||||||||||||||||| |||      
T  9921803 attgatataatttattattttgaaaccttagaaagacaagattaagattaatttc----ataggctcattttcaactaaaatataatttgttttattacg 9921898  T
Q  297 aaaattatcccaatttct 314  Q
    ||||||||||||||||||    
T  9921899 aaaattatcccaatttct 9921916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 3665318 - 3665406
Alignment:
Q  132 atgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaatttttt 220  Q
    ||||| ||| |||||||||||||||||||||||||||| ||  |||||||| ||||| |||||||||||||||||||||||| ||||||    
T  3665318 atgatcttgcattatcaaattcaattttgcaatcctttcaatcaattcaagaaagttgacattactatattgatataatttattttttt 3665406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 26 - 314
Target Start/End: Complemental strand, 25201322 - 25201049
Alignment:
Q  26 aaatgcaacaattgataaaaaataacaacaaaacataagaagcggagtggctcacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcg 125  Q
    ||||| ||| ||||||| |||| |||||||||||| || |||  ||||||  ||||||||| ||||| | | | |||||| |||||||||||||||||||    
T  25201322 aaatgtaactattgatacaaaa-aacaacaaaacaaaaaaagttgagtgggccacatgatcctaaatacgtctcacatcattttcatgatcatgaatgcg 25201224  T
Q  126 tctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaac 225  Q
    ||||| |||||  || |||||||||||||||                  |||| ||  ||||| |||||||||||||||||||||||| |||||||||||    
T  25201223 tctcacatgatcatgcattatcaaattcaat-----------------caattaaaaaaagttgacattactatattgatataatttatttttttggaac 25201141  T
Q  226 atctgaaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
     | |||||||||  ||||||||||| |||  | || |  | ||||| |||||||||||  ||||||||||||| ||||||||||||||||||    
T  25201140 ttttgaaagacaagattaagattaaattctatggttggtctatttttaactaaaatatcttttgttttgttatgaaaattatcccaatttct 25201049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 193 - 314
Target Start/End: Original strand, 29282952 - 29283075
Alignment:
Q  193 ttactatattgatataatttaattttttggaacatctgaaagacaat--taagattaatttcgttagtagacccattttcaactaaaatataatttgttt 290  Q
    |||| ||| |||||||||||||||||||||||| | ||||| |||||  |||||||||||||  ||||| ||  || ||||| ||||||||||||| |||    
T  29282952 ttaccataatgatataatttaattttttggaacctttgaaaaacaatattaagattaatttctctagtaaacttatattcaattaaaatataatttattt 29283051  T
Q  291 tgttataaaattatcccaatttct 314  Q
    ||||||||||||||| ||||||||    
T  29283052 tgttataaaattatctcaatttct 29283075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 312
Target Start/End: Original strand, 42512194 - 42512294
Alignment:
Q  215 ttttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaatt 311  Q
    ||||||| ||| | ||||||||||  |||||||||||||| |||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42512194 ttttttgaaacctttgaaagacaagattaagattaatttctttagtaggttcattttcaactaaaatataatttgttttgttatgaaaattatcccaatt 42512293  T
Q  312 t 312  Q
    |    
T  42512294 t 42512294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 28143443 - 28143518
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| | |||| |||||||||    
T  28143443 attaagattaatttctctagtagatccattttcaactaaaatataatttgttttgttatgagaattctcccaattt 28143518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 312
Target Start/End: Complemental strand, 13957477 - 13957291
Alignment:
Q  116 catgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaat 215  Q
    |||||||| |||||  ||||| ||| |||||||||||||| | |||||| |||  ||  |||||||| ||||| |||||||||||||||| ||||||| |    
T  13957477 catgaatgtgtctcgcatgatcttgcattatcaaattcaaatatgcaattcttccaatcaattcaagaaagttgacattactatattgatgtaatttatt 13957378  T
Q  216 tttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgtta-taaaattatcccaattt 312  Q
    |             |||||||||  ||||||||| ||||  ||||||  | |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  13957377 t-------------gaaagacaagattaagattagtttctctagtaggtctattttcaactaaaatataatttgttttgttacgaaaattatcccaattt 13957291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 36213824 - 36213772
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttataaaattatcccaatttct 314  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  36213824 cccattttcaactaaaatagaatttgttttgttattaaattatcccaatttct 36213772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 51337758 - 51337683
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||    |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  51337758 attaagattaatttctccggtaggcccattttcaactaaaatataatttgttttgttatgaaaattctcccaattt 51337683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 3665450 - 3665528
Alignment:
Q  237 aattaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||  || ||| | ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  3665450 aattaagattaatttctctaataggctcattttcaactaaaatagaatttgttttgttatgaaaattatctcaatttct 3665528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 39480263 - 39480316
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  39480263 cccattttcaactaaaatagaatttgctttgttatgaaaattatcccaatttct 39480316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 14192311 - 14192386
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    ||||||||||||||   |||||| ||||||||| |||||||||| |||||||||||||| || ||| |||||||||    
T  14192311 attaagattaatttttctagtaggcccattttctactaaaatattatttgttttgttatgaagattctcccaattt 14192386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 6830670 - 6830723
Alignment:
Q  106 gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaatttt 159  Q
    ||||||||||| | ||||||||||| ||||| ||| ||||||||||||||||||    
T  6830670 gtttcatgatcctaaatgcgtctcacatgatcttgcattatcaaattcaatttt 6830723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 9896393 - 9896461
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttt 169  Q
    ||||| ||||||||| ||||||||||||||  || || ||| | ||||||||||||||||||||||||||    
T  9896393 acatcggtttcatgaacatgaatgcgtctcgcat-atcttgcaatatcaaattcaattttgcaatccttt 9896461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 51890422 - 51890495
Alignment:
Q  240 taagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||  ||||||  | |||||||||||||||||||||| ||||||||| ||||| || |||||||    
T  51890422 taagattaatttctatagtaggtctattttcaactaaaatataatttattttgttatgaaaatgattccaattt 51890495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 51890696 - 51890769
Alignment:
Q  240 taagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||  ||||||  | |||||||||||||||||||||| ||||||||| ||||| || |||||||    
T  51890696 taagattaatttctatagtaggtctattttcaactaaaatataatttattttgttatgaaaatgattccaattt 51890769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 6261593 - 6261644
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||| |||||||||| |||||| |||||||| ||||||||||||||||    
T  6261593 cccatttttaactaaaatagaatttgctttgttatgaaaattatcccaattt 6261644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 9900076 - 9900127
Alignment:
Q  264 cattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||||||||| ||||  |||| ||||||||||||||||||    
T  9900076 cattttcaactaaaatataattcgtttcattatgaaaattatcccaatttct 9900127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 42511603 - 42511690
Alignment:
Q  132 atgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttt 219  Q
    ||||| ||| |||||||||||||| | ||||||| ||| ||  |||||||| ||||| | ||||| |||||||| ||||||| |||||    
T  42511603 atgatcttgcattatcaaattcaactatgcaatcatttcaatcaattcaagaaagttgagattacaatattgatgtaatttatttttt 42511690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 10095037 - 10095087
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||| ||||||| |||||| |||||||| ||||||||||||||||||    
T  10095037 attttcaattaaaatagaatttgctttgttatgaaaattatcccaatttct 10095087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1364 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 100 - 314
Target Start/End: Complemental strand, 1104 - 883
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactat 199  Q
    ||||| ||||||| || |||||||||||||  ||||| |||||||||||||||||| ||||||||| ||| ||  |||||||| || || ||||||||||    
T  1104 acatcggtttcataattatgaatgcgtctcgcatgatcttgtattatcaaattcaaatttgcaatcatttcaatcaattcaagaaatttgacattactat 1005  T
Q  200 attgatataatttaattttttggaacatctgaaagac------aattaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgt 293  Q
    |||||||||||||| ||||||||||  | ||||||||       |||||||||||||||    |||| | ||||||||||||||||| ||||||||||||    
T  1004 attgatataatttatttttttggaatctttgaaagactatatatattaagattaatttctcaggtaggctcattttcaactaaaatagaatttgttttgt 905  T
Q  294 tat-aaaattatcccaatttct 314  Q
    ||| ||||| ||| ||||||||    
T  904 tatgaaaataatctcaatttct 883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 144 - 306
Target Start/End: Original strand, 3229093 - 3229254
Alignment:
Q  144 tatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--atta 241  Q
    |||||||||||||||||||||||||| || ||||||||| || || ||||||| |||||||||||||||| ||||||||||| |  ||||||||  ||||    
T  3229093 tatcaaattcaattttgcaatcctttcaattaattcaagaaatttgacattacaatattgatataatttatttttttggaaccttagaaagacacgatta 3229192  T
Q  242 agattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcc 306  Q
    |||||||||||    |||| |  |||||||||||  | ||||||||||||||||| ||||||||||    
T  3229193 agattaatttc----gtaggctaattttcaactaggaaataatttgttttgttatgaaaattatcc 3229254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 312
Target Start/End: Original strand, 11680737 - 11680920
Alignment:
Q  132 atgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctga 231  Q
    ||||| ||| |||||||||||||| | ||||||||||| ||  |||||||| ||||| |||||| ||||||||| | ||||| || |||| ||| | |||    
T  11680737 atgatcttgcattatcaaattcaactatgcaatcctttcaatcaattcaagaaagttgacattattatattgatgtgatttatttgtttgaaacctttga 11680836  T
Q  232 aagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||| |  ||||||||||||||   ||||||   ||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  11680837 aagataagattaagattaatttttctagtaggttcattttcaactaaaatataatttgttttgttatgaaaattattccaattt 11680920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 132 - 314
Target Start/End: Complemental strand, 26817581 - 26817397
Alignment:
Q  132 atgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgat-ataatttaattttttggaacatctg 230  Q
    ||||| ||| |||||||||||||||| ||||||| ||| ||  |||||||| ||||| |||||||||||||||| | || ||  ||||||||||  | ||    
T  26817581 atgatcttgcattatcaaattcaattctgcaatcatttcaatcaattcaagaaagttaacattactatattgataaaaaatttgttttttggaatctttg 26817482  T
Q  231 aaagaca--attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||  |||||||||||||||  |||||  || |||||||||||||||| ||||||  ||||||| |||| |||||||||||||    
T  26817481 aaagacaagattaagattaatttctctagtatgcctattttcaactaaaatagaatttg--ttgttatgaaaaatatcccaatttct 26817397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 33516614 - 33516689
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  33516614 attaagattaatttctctagtaggcccattttcaactaaaatataatttgttttgttatgaaaattctcccaattt 33516689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 296
Target Start/End: Original strand, 4065443 - 4065633
Alignment:
Q  106 gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgat 205  Q
    ||||| ||||||||||||   || | ||||| ||| |||||||||||||||| |||||| |||| ||  ||| || | ||||| |||||| | |||| ||    
T  4065443 gtttcttgatcatgaatgtcccttacatgatcttgcattatcaaattcaattatgcaatgctttcaatcaatccatgaaagttgacattattgtattaat 4065542  T
Q  206 ataatttaattttttggaacatctgaaagaca-attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat 296  Q
    |||||||| ||||| |||   ||| || || | ||||||||| |||||   ||||| | |||||||||||||||||| ||||||||||||||    
T  4065543 ataatttattttttaggatagtcttaaggaaagattaagatttatttctcaagtag-ctcattttcaactaaaatatcatttgttttgttat 4065633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 22524969 - 22524844
Alignment:
Q  100 acatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactat 199  Q
    ||||| |||||||||||||||||| ||||||||| | |||| | | |  || |||||||| ||||| ||| ||  |||||||| |||||  ||| || ||    
T  22524969 acatcggtttcatgatcatgaatgtgtctcatataaatttgcaatgttgaagtcaattttacaatcttttcaatcaattcaagaaagttgtcatcacaat 22524870  T
Q  200 attgatataatttaattttttggaac 225  Q
    | |||||||||||| |||||||||||    
T  22524869 aatgatataatttatttttttggaac 22524844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 1423044 - 1422994
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  1423044 attttcaactaaaatagaatttgctttgttatgaaaattatcccaatttct 1422994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 14677845 - 14677787
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat 296  Q
    ||||||||||||||   || ||| |||||||||||||||||||| ||||||||||||||    
T  14677845 attaagattaatttttctaataggcccattttcaactaaaatattatttgttttgttat 14677787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 21442726 - 21442676
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  21442726 attttcaactaaaatagaatttgctttgttatgaaaattatcccaatttct 21442676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 314
Target Start/End: Complemental strand, 31129921 - 31129784
Alignment:
Q  175 aattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaa 272  Q
    |||||||| |||||  ||| || ||||| |||||||||| ||||||| ||| |  |||| | ||  |||||||||||||| |    |||| |||||||||    
T  31129921 aattcaagaaagttgtcatcacaatattaatataatttatttttttgaaacctgagaaatataagattaagattaatttcat----agactcattttcaa 31129826  T
Q  273 ctaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||    
T  31129825 ctaaaatgtaa-ttgttttgttatgaaaattatcccaatttct 31129784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 1131866 - 1131813
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||    
T  1131866 cccattttcaactaaaatagaatttgctttattatgaaaattatcccaatttct 1131813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 4090669 - 4090763
Alignment:
Q  126 tctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaatttttt 220  Q
    ||||||||||| ||| |||||| ||||||||| | ||||| ||| ||  |||| ||| ||||| ||| || |||||| |||||||||| ||||||    
T  4090669 tctcatatgatcttgcattatctaattcaattctacaatcttttcaatcaatttaagaaagttgacactattatattaatataatttattttttt 4090763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 15060255 - 15060205
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||| |||||||||| ||||||||||||||| ||||||||| ||||||||    
T  15060255 atttttaactaaaatagaatttgttttgttatgaaaattatctcaatttct 15060205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 22012131 - 22012181
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||| ||||||||    
T  22012131 attttcaactaaaatagaatttgctttgttatgaaaattatctcaatttct 22012181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 34043633 - 34043583
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||||| ||||||    
T  34043633 attttcaactaaaatagaatttgctttgttatgaaaattatccccatttct 34043583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 312
Target Start/End: Original strand, 13758742 - 13758840
Alignment:
Q  215 ttttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttataaaattatcccaattt 312  Q
    ||||||| || || ||||||||||  ||||||||||||||  |||||| | ||||||||||| ||| ||| ||| |||| || | |||||||||||||||    
T  13758742 ttttttgaaatatttgaaagacaagattaagattaatttctatagtaggctcattttcaacttaaa-atagttttttttttttttaaattatcccaattt 13758840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 314
Target Start/End: Original strand, 98177 - 98415
Alignment:
Q  78 cacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaat 177  Q
    |||||||||  |||||| | | ||||| ||||||| || ||||||| | |||  ||||| ||| |||||||||||||| |||||||||||||  |  |||    
T  98177 cacatgatcccaaatgcgtctcacatcggtttcataattatgaatgtg-ctcgcatgatcttgcattatcaaattcaaatttgcaatcctttcgatcaat 98275  T
Q  178 tcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--attaagattaatttcgttagtagacccattttcaacta 275  Q
    ||||| || || |||||| ||||||||||||||||| ||||||||||  | |||||||||  |||||||||||||||  ||| |  | ||||||||||||    
T  98276 tcaagaaatttgacattaatatattgatataatttatttttttggaatctttgaaagacaagattaagattaatttctctagcatgctcattttcaacta 98375  T
Q  276 aaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||| ||||| |||| |||| ||||| ||| ||||||||    
T  98376 aaatagaatttattttattatgaaaataatctcaatttct 98415  T

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Target: scaffold0263 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 142 - 300
Target Start/End: Original strand, 18489 - 18649
Alignment:
Q  142 attatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagac--aat 239  Q
    |||||||||||||| | |||||||| || ||  |||||||| || || ||||||| |||||||||||||||| ||||||||||  | ||||||||   ||    
T  18489 attatcaaattcaaatatgcaatccattgaatcaattcaagaaatttgacattacaatattgatataatttatttttttggaatctttgaaagactagat 18588  T
Q  240 taagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttataaaa 300  Q
    ||||||||| ||   |||||| | ||||||||||||||||| |||||||||||||||||||    
T  18589 taagattaagttttctagtaggctcattttcaactaaaataaaatttgttttgttataaaa 18649  T

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Target: scaffold0160 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 314
Target Start/End: Complemental strand, 25331 - 25157
Alignment:
Q  143 ttatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--att 240  Q
    ||||||||||||||| ||||||||||| ||  | |||||| ||||| |||||| ||||||||||||||||| |||| |||||| | |||||||||  |||    
T  25331 ttatcaaattcaattatgcaatcctttcaatcatttcaagaaagttgacattaatatattgatataatttatttttatggaacctttgaaagacaagatt 25232  T
Q  241 aagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    | |||||| |||  || ||  || ||||||||||||||| ||||||| ||||| || || |||||| ||||||||    
T  25231 aggattaacttctctaatatgccaattttcaactaaaatttaatttggtttgtcatgaatattatctcaatttct 25157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 312
Target Start/End: Complemental strand, 1591 - 1354
Alignment:
Q  78 cacatgatcataaatgcatttgacatcagtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaat 177  Q
    |||||||||  |||||| | | ||||| |||| || || |||||| ||||||  ||||| ||| ||||| ||| |||| | |||||||| || ||  |||    
T  1591 cacatgatcccaaatgcgtctcacatcggttttataattatgaatacgtctcgcatgatcttgcattattaaagtcaaatatgcaatccattgaatcaat 1492  T
Q  178 tcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagac--aattaagattaatttcgttagtagacccattttcaacta 275  Q
    ||||| || || ||||||| |||||||||||||||| | ||||||||  | ||||||||   ||||||||||| ||   |||||| | ||||||||||||    
T  1491 tcaagaaatttgacattacaatattgatataatttattattttggaatctttgaaagactagattaagattaagttttctagtaggctcattttcaacta 1392  T
Q  276 aaatataatttgttttgttat-aaaattatcccaattt 312  Q
    ||||| ||||||||||||||| ||||| ||| ||||||    
T  1391 aaatagaatttgttttgttatgaaaataatctcaattt 1354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 296
Target Start/End: Complemental strand, 41024 - 40874
Alignment:
Q  144 tatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--atta 241  Q
    ||||||||||||||||||||| |||| ||| |||||||| || || ||||||| |||||||||||||||| | ||||  |||    ||||||||  ||||    
T  41024 tatcaaattcaattttgcaatgctttcaaccaattcaagaaatttgacattacaatattgatataatttagtattttttaaccatagaaagacaagatta 40925  T
Q  242 agattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat 296  Q
    ||||||||    || |||| | |||||||||||||||||||||||||||||||||    
T  40924 agattaat----tttgtagcctcattttcaactaaaatataatttgttttgttat 40874  T

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Target: scaffold0137 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 21299 - 21402
Alignment:
Q  117 atgaatgcgtctcatatgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaatt 216  Q
    |||||||||||||  ||||| ||| |||||||||||||||| | |||| |||| ||  |||||||| ||||| |||||| ||||||||||||||||||||    
T  21299 atgaatgcgtctcgcatgatcttgcattatcaaattcaattattcaattctttcaatcaattcaagaaagttcacattaatatattgatataatttaatt 21398  T
Q  217 tttt 220  Q
    ||||    
T  21399 tttt 21402  T

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Target: scaffold0743 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 3291 - 3366
Alignment:
Q  238 attaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcccaattt 312  Q
    |||||| ||||||||  |||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||    
T  3291 attaagtttaatttctctagtaggccaattttcaactaaaatataatttgttttgttatgaaaattctcccaattt 3366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 311
Target Start/End: Original strand, 60427 - 60590
Alignment:
Q  153 caattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaattttttggaacatctgaaagaca--attaagattaatt 250  Q
    ||||| ||||||||||| ||  |||| ||| || || |||||||||||||||||||||||  ||||| | ||| | | ||| |||  |||||||||||||    
T  60427 caattatgcaatcctttcaatcaatttaagaaa-ttaacattactatattgatataatttcttttttggaaaccttttaaaaacaatattaagattaatt 60525  T
Q  251 tcgttagtagacccattttcaactaaaat---ataatttgttttgttat-aaaattatcccaatt 311  Q
    |  ||||||   |||||||||||||||||   ||||||||||||||||| ||||||||| |||||    
T  60526 tttttagtatgtccattttcaactaaaatataataatttgttttgttatgaaaattatctcaatt 60590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 2387 - 2492
Alignment:
Q  210 tttaattttttggaacatctgaaagacaa--ttaagattaatttcgttagtagacccattttcaactaaaatataatttgttttgttat-aaaattatcc 306  Q
    |||| ||||||||||  | ||||||||||  ||||||||||||||  || |||   |||||||||||||||||||||||||||||||||  ||||||||     
T  2387 tttatttttttggaaactttgaaagacaagattaagattaatttctataataggttcattttcaactaaaatataatttgttttgttatgcaaattatct 2486  T
Q  307 caattt 312  Q
    ||||||    
T  2487 caattt 2492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 1121 - 1206
Alignment:
Q  132 atgattttgtattatcaaattcaattttgcaatccttttaactaattcaagtaagtttacattactatattgatataatttaatttt 218  Q
    ||||| |||||||||||||||||| | | || |||||| ||  |||||||| ||||| ||||||||||||| || ||||||| ||||    
T  1121 atgatcttgtattatcaaattcaactataca-tcctttcaatcaattcaagaaagttgacattactatattaatgtaatttattttt 1206  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 88122 - 88172
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||| ||||||||    
T  88122 attttcaactaaaatagaatttgctttgttatgaaaattatctcaatttct 88172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 88598 - 88648
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||| ||||||||    
T  88598 attttcaactaaaatagaatttgctttgttatgaaaattatctcaatttct 88648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 89074 - 89124
Alignment:
Q  265 attttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    |||||||||||||||| |||||| |||||||| ||||||||| ||||||||    
T  89074 attttcaactaaaatagaatttgctttgttatgaaaattatctcaatttct 89124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 87645 - 87698
Alignment:
Q  262 cccattttcaactaaaatataatttgttttgttat-aaaattatcccaatttct 314  Q
    ||||||||||||||||||| |||||| || ||||| ||||||||| ||||||||    
T  87645 cccattttcaactaaaatagaatttgcttcgttatgaaaattatctcaatttct 87698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 10171 - 10224
Alignment:
Q  106 gtttcatgatcatgaatgcgtctcatatgattttgtattatcaaattcaatttt 159  Q
    |||| |||||| | ||||||||||| ||||| ||| ||||||||||||||||||    
T  10171 gttttatgatcctaaatgcgtctcacatgatcttgcattatcaaattcaatttt 10224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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