View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_high_4 (Length: 620)
Name: NF7966_high_4
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 13 - 604
Target Start/End: Original strand, 45555930 - 45556521
Alignment:
| Q |
13 |
aatattgaaatgggtgaacaagtgtcaaagaagatccagctgctgggacctgaaggtactggaaattttgttcttatgtcaaacatatacagttctgtag |
112 |
Q |
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| T |
45555930 |
aatattgaaatgggtgaacaagtgtcaaagaagatccagctgctgggacctgaaggtactggaaattttgttcttatgtcaaacatatacagttctgtag |
45556029 |
T |
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| Q |
113 |
gaagatgggatgatgcagcatatattagaagcatacaaaggcatcacggttacaagaaaagcccaggatgcagttgggttgagatctctggggtaatcca |
212 |
Q |
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| T |
45556030 |
gaagatgggatgatgcagcatatattagaagcatacaaaggcatcacggttacaagaaaagcccaggatgcagttgggttgagatctctggggtaatcca |
45556129 |
T |
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| Q |
213 |
tgtatttatcgggggccatcaatctcatccacaatcagcatccataaataaaaagttacaggaactgctggtgcagatgaaaaaattgggatatcgcgca |
312 |
Q |
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| T |
45556130 |
tgtatttatcgggggccatcaatctcatccacaatcagcatccataaataaaaagttacaggaactgctggtgcagatgaaaaaattgggatatcgcgca |
45556229 |
T |
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| Q |
313 |
gattctggttttgttcttcatgatgttgaagaagaggagaaggagcagattctcctttatcatagtgaaaaagtagccattgcatttggaattctaaata |
412 |
Q |
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| T |
45556230 |
gattctagttttgttcttcatgatgttgaagaagaggagaaggagcagattctcctttatcatagtgaaaaagtagccattgcatttggaattctaaata |
45556329 |
T |
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| Q |
413 |
ctagtcccagcagccgcattctagttacgaaaaatttgcggatttgtgtggactgtcactctgcaataaaattcattactctcttaacagaaagggagat |
512 |
Q |
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| T |
45556330 |
ctagtcccagcagccgcattctagttacgaaaaatttgcggatttgtgtggactgtcactctgcaataaaattcattactctcttaacagaaagggagat |
45556429 |
T |
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| Q |
513 |
aacagtaagagatgcaagtcggtttcatcattttaaggacggaatctgcaattgtcaggatttctggtaagaaaaaggcaaaggcggatttg |
604 |
Q |
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| T |
45556430 |
aacagtaagagatgcaagtcggtttcatcattttaaggacggaatctgcaattgtcaggatttctggtaagaaaaaggcaaaggcggatttg |
45556521 |
T |
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