View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_high_41 (Length: 259)
Name: NF7966_high_41
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_high_41 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 8966 - 9158
Alignment:
| Q |
12 |
gtcgaagaatatgtgccattagatattactagctagtatttattagagtaatatataataagattagcaagaaagtataggaaaacaaaaggaagcatag |
111 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8966 |
gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatata--ataagattagcaagaaagta--ggaaaacaaaaggaagcatag |
9061 |
T |
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| Q |
112 |
aggaaaggaagtgattggcttgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtgg |
208 |
Q |
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| T |
9062 |
agcaaaggaagtgattggcgtgtggaaataaagatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgg |
9158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 16420254 - 16420446
Alignment:
| Q |
12 |
gtcgaagaatatgtgccattagatattactagctagtatttattagagtaatatataataagattagcaagaaagtataggaaaacaaaaggaagcatag |
111 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16420254 |
gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatata--ataagattagcaagaaagta--ggaaaacaaaaggaagcatag |
16420349 |
T |
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| Q |
112 |
aggaaaggaagtgattggcttgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtgg |
208 |
Q |
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| T |
16420350 |
agcaaaggaagtgattggcgtgtggaaataaagatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgg |
16420446 |
T |
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Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 5538515 - 5538319
Alignment:
| Q |
12 |
gtcgaagaatatgtgccattagatattactagctagtatttattagagtaatatata--ataagattagcaagaaagtataggaaaacaaaaggaagcat |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
5538515 |
gtcgaaaaatatgtgccattagatattactagctagtatttattagagtaatatatataataagattagcaagaaagta--ggaaaacaaaaggaagcat |
5538418 |
T |
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| Q |
110 |
agaggaaa-ggaagtgattggcttgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtgg |
208 |
Q |
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| T |
5538417 |
agagcaaaaggaagtgattg-cgtgtggaaataaacatccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagctagtgg |
5538319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 19932296 - 19932453
Alignment:
| Q |
48 |
tatttattagagtaatatataataagattagcaagaaagtataggaaaacaaaaggaagcatagaggaaaggaagtgattggcttgtggaaataaacatc |
147 |
Q |
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||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||| |||||| || ||||||||||||||| |
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| T |
19932296 |
tatttattaaagtaatatataataagattagcaataaagta--ggaaagcaaaaggaagcatagagaaaaggaactgattgactagtggaaataaacatc |
19932393 |
T |
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| Q |
148 |
cacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
19932394 |
cacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg |
19932453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 18901508 - 18901672
Alignment:
| Q |
48 |
tatttattagagtaatatataataagattagcaagaaagtataggaaaacaaaaggaagcatagaggaaaggaagtgattggcttgtggaaa-------t |
140 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||| || ||||||| | |
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| T |
18901508 |
tatttattaaagtaatatataataagattagcaagaaagta--ggaaagcaaaaggaagcatagagaaaaggaactgattgactggtggaaataaacatt |
18901605 |
T |
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| Q |
141 |
aaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
18901606 |
aaacatccacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg |
18901672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 51784783 - 51784714
Alignment:
| Q |
136 |
gaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtg |
207 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
51784783 |
gaaataaacat--acgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg |
51784714 |
T |
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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 51784833 - 51784794
Alignment:
| Q |
48 |
tatttattagagtaatatataataagattagcaagaaagt |
87 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
51784833 |
tatttattaaagtaatatataataagattagcaagaaagt |
51784794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 18901445 - 18901487
Alignment:
| Q |
19 |
aatatgtgccattagatattactagctagtatttattagagta |
61 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||| |
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| T |
18901445 |
aatatgtgacactagatattactagctagtatttattagagta |
18901487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 51784892 - 51784859
Alignment:
| Q |
19 |
aatatgtgccattagatattactagctagtattt |
52 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
51784892 |
aatatgtgccactagatattactagctagtattt |
51784859 |
T |
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Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 63 - 207
Target Start/End: Complemental strand, 37940512 - 37940370
Alignment:
| Q |
63 |
tatataataagattagcaagaaagtataggaaaacaaaaggaagcatagaggaaaggaagtgattggcttgtggaaataaacatccacgtttcttcccaa |
162 |
Q |
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|||||||||||||||||||||||||| || || ||||| ||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||| |
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| T |
37940512 |
tatataataagattagcaagaaagta--ggtaagcaaaaagaagcataggaaaaaggaactgattaactagtggaaataaacatccacgtttcttcccaa |
37940415 |
T |
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| Q |
163 |
tcccattttccactatgttccatattgtgaggaaataagttagtg |
207 |
Q |
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| T |
37940414 |
tctcattttccactatgttccatatttttaggaaataagttagtg |
37940370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 37940592 - 37940550
Alignment:
| Q |
19 |
aatatgtgccattagatattactagctagtatttattagagta |
61 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37940592 |
aatatgtgccactagatattactagctagtatttattagagta |
37940550 |
T |
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