View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7966_high_46 (Length: 250)

Name: NF7966_high_46
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7966_high_46
NF7966_high_46
[»] chr2 (3 HSPs)
chr2 (1-161)||(32650148-32650328)
chr2 (162-239)||(32650402-32650479)
chr2 (100-141)||(26514980-26515021)
[»] chr6 (2 HSPs)
chr6 (72-143)||(1955348-1955419)
chr6 (83-119)||(8514175-8514211)
[»] chr4 (4 HSPs)
chr4 (83-144)||(22658299-22658360)
chr4 (92-145)||(37538034-37538087)
chr4 (102-144)||(12567390-12567432)
chr4 (86-142)||(31053070-31053126)
[»] chr3 (2 HSPs)
chr3 (72-141)||(35970409-35970478)
chr3 (88-144)||(48531100-48531156)
[»] chr7 (2 HSPs)
chr7 (86-146)||(31955618-31955678)
chr7 (100-144)||(18358907-18358951)
[»] chr5 (1 HSPs)
chr5 (68-119)||(42347651-42347702)
[»] chr1 (1 HSPs)
chr1 (72-119)||(22336417-22336464)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 32650148 - 32650328
Alignment:
Q  1 gaattattagaagagtttaaagttattctatgtttagttgccacataaactcatgaatatcaccacaattcat--------------------tgacgta 80  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||                    |||||||    
T  32650148 gaattattagaagagtttaaagttattctatgtttagttgccacgtaaactcatgaatatcaccacaattcatatatttttatatttattaattgacgta 32650247  T
Q  81 ataatacattattgcatgcatgtgtaaaataattatacactcataatgtatactaattaaattcttatttgaattgatgtt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  32650248 ataatacattattgcatgcatgtgtaaaataattatacactcataaactatactaattaaattcttatttgaattgatgtt 32650328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 32650402 - 32650479
Alignment:
Q  162 gactaaacgaatacatgaccaatacttggattgatttggtgttattgatttgagatttgggaatgtgttgctcttcat 239  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32650402 gactaaacgaatacatgaccaacacttggattgatttggtgttattgatttgagatttgggaatgtgctgctcttcat 32650479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 26514980 - 26515021
Alignment:
Q  100 atgtgtaaaataattatacactcataatgtatactaattaaa 141  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  26514980 atgtgtaaaataattatacactaataaagtatactaattaaa 26515021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 1955348 - 1955419
Alignment:
Q  72 attgacgtaataatacattattgcatgcatgtgtaaaataattatacactcataatgtatactaattaaatt 143  Q
    |||||||| | ||||||| |||  ||| ||||||||||||||| |||||| | |||||||||||||||||||    
T  1955348 attgacgtgacaatacataattaaatgtatgtgtaaaataattgtacactgacaatgtatactaattaaatt 1955419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 8514175 - 8514211
Alignment:
Q  83 aatacattattgcatgcatgtgtaaaataattataca 119  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  8514175 aatacatcattgcatgtatgtgtaaaataattataca 8514211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 22658360 - 22658299
Alignment:
Q  83 aatacattattgcatgcatgtgtaaaataattatacactcataatgtatactaattaaattc 144  Q
    |||||||||||| |  ||||||||||||||||||||||| | |  |||||||||||||||||    
T  22658360 aatacattattgaaatcatgtgtaaaataattatacactaacagagtatactaattaaattc 22658299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 37538087 - 37538034
Alignment:
Q  92 ttgcatgcatgtgtaaaataattatacactcataatgtatactaattaaattct 145  Q
    ||||||||||||||||||||||||||||||   | || ||||||||||||||||    
T  37538087 ttgcatgcatgtgtaaaataattatacactgtcagtgcatactaattaaattct 37538034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 12567390 - 12567432
Alignment:
Q  102 gtgtaaaataattatacactcataatgtatactaattaaattc 144  Q
    |||||||||||||||||  | ||||||||||||||||||||||    
T  12567390 gtgtaaaataattatactttgataatgtatactaattaaattc 12567432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 31053070 - 31053126
Alignment:
Q  86 acattattgcatgcatgtgtaaaataattatacactcataatgtatactaattaaat 142  Q
    |||| |||| ||||||||||||||||||||||  || | | ||||||||||||||||    
T  31053070 acatcattggatgcatgtgtaaaataattatattctgacagtgtatactaattaaat 31053126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 35970478 - 35970409
Alignment:
Q  72 attgacgtaataatacattattgcatgcatgtgtaaaataattatacactcataatgtatactaattaaa 141  Q
    |||||||| | || |||| |||| |||||||||||||||||| ||||||||| |  ||||||||||||||    
T  35970478 attgacgtgacaacacatgattgaatgcatgtgtaaaataatcatacactcacagagtatactaattaaa 35970409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 48531156 - 48531100
Alignment:
Q  88 attattgcatgcatgtgtaaaataattatacactcataatgtatactaattaaattc 144  Q
    ||||||| |||||||| ||||||||||||||||||| |   ||||||||| ||||||    
T  48531156 attattgtatgcatgtttaaaataattatacactcacacaatatactaatgaaattc 48531100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 31955618 - 31955678
Alignment:
Q  86 acattattgcatgcatgtgtaaaataattatacactcataatgtatactaattaaattctt 146  Q
    ||||||||| ||| |||||||||||||||||| ||| |||  |||||||||||||| ||||    
T  31955618 acattattgaatgtatgtgtaaaataattatatacttatagagtatactaattaaactctt 31955678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 18358907 - 18358951
Alignment:
Q  100 atgtgtaaaataattatacactcataatgtatactaattaaattc 144  Q
    |||||||||||||||||||||| | |  |||||||||||||||||    
T  18358907 atgtgtaaaataattatacactgacagagtatactaattaaattc 18358951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 42347702 - 42347651
Alignment:
Q  68 attcattgacgtaataatacattattgcatgcatgtgtaaaataattataca 119  Q
    ||||||||| || ||||||||| |||| ||||||| ||||||||||||||||    
T  42347702 attcattgatgtgataatacatcattggatgcatgcgtaaaataattataca 42347651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 22336464 - 22336417
Alignment:
Q  72 attgacgtaataatacattattgcatgcatgtgtaaaataattataca 119  Q
    ||||| ||||| ||||||||||  ||||||||||||||||||||||||    
T  22336464 attgatgtaatcatacattatttgatgcatgtgtaaaataattataca 22336417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University