View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7966_high_47 (Length: 249)
Name: NF7966_high_47
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_high_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 5352204 - 5351969
Alignment:
| Q |
1 |
tatttcataataatacatggaattttaacaaacttcaacataacattgcaaataaaacacaggacaaggcaacaatgcaaataaaattctaaatgtaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5352204 |
tatttcataataatacatggaattttaacaaacttcaacataacattgtaaatcaaacacaggacaaggcaacaatgcaaataaaattctaaatgcaaat |
5352105 |
T |
|
| Q |
101 |
aaagaacaaatacgttttattaattgaataaaaatcacgattgaagcaatttatggaacttaaagttgtttcaatttttgccttgaagttgaagggtaaa |
200 |
Q |
| |
|
||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352104 |
aaagaacaa-tacatttttttaattgaataaaaatcacgattgaagcaatttatggaacttaaagttgtttcaatttttgccttgaagttgaagggtaaa |
5352006 |
T |
|
| Q |
201 |
tgccttcaaggacaaaagaactccctccaaattattc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352005 |
tgccttcaaggacaaaagaactccctccaaattattc |
5351969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 5345024 - 5344968
Alignment:
| Q |
164 |
agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
5345024 |
agttgtttcaatttttgccttgaagttgcagagtaaatgccttcaaggacaacagaa |
5344968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 5325075 - 5325119
Alignment:
| Q |
170 |
ttcaatttttgccttgaagttgaagggtaaatgccttcaaggaca |
214 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||||||| |
|
|
| T |
5325075 |
ttcaatttctgccttgaagtttaagggtaaattccttcaaggaca |
5325119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 5338089 - 5338147
Alignment:
| Q |
164 |
agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaact |
222 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||||||| |||| ||||||| ||||||| |
|
|
| T |
5338089 |
agttgtttcaaatttaaccttgaagctgaagggtaaattcctttaaggacacaagaact |
5338147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University