View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_high_5 (Length: 550)
Name: NF7966_high_5
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 13 - 536
Target Start/End: Complemental strand, 13122185 - 13121662
Alignment:
| Q |
13 |
aacctgtgacaggcaggtaatgttttatggtagttttctttcactaattttgtaaatttataaatgtaatnnnnnnnggaaggccaaagtatgaagtttt |
112 |
Q |
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| T |
13122185 |
aacctgagtcaggcatgtaatgttttatggtaactttctttcactcattttataaatttataaatgtaataaataaaggaaggccaaaatatgaagtttt |
13122086 |
T |
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| Q |
113 |
tgtttcatttttatttgctttaggatagcatgacaatatttgttaaggttagatcaaatggtttgcactgcattgactggtagttggatgttgataataa |
212 |
Q |
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| T |
13122085 |
tgtttcatttttatttgctttaggatagcatgacaatatttgttaaggttagatcaaatggtttgcactgcattgactggtagttggatgttgataataa |
13121986 |
T |
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| Q |
213 |
ctttcataggacagtactaaatctctgagcatatctttttcaaatgccattctctagaaccatacatttcaattcaaacaacaacatgtccaccttagcc |
312 |
Q |
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| T |
13121985 |
cattcataggacagtactaaatctctgagcatatctttttcaaatgccattctctagaaccgcacatttcaattcaaacaacaacatgtccatcttagcc |
13121886 |
T |
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| Q |
313 |
cacatgggtgatggaaacagcaatagcaataattcatgcattagttatccttaagaacgagatagtatactaaaacttgatatccagctcaaggaccgac |
412 |
Q |
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| T |
13121885 |
cacatgggtgatggaaacagcaatagcaataattcatgcattagttatccttaagaacgagatagtatactaaaacttgatatccagctcaaggaccgac |
13121786 |
T |
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| Q |
413 |
taatttgaggggtccaaatcctaccgtccatttgcaggctgtatctcaaatccttaagcacgagatagtattctaaatggtggtctgcaactgcaattgt |
512 |
Q |
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| T |
13121785 |
taatttgaggggtccaaatcctaccgtccatttgcaggctgtatctcaaatccgtaagcacgagatagtattctaaatggtggtctgcaactgcaattgt |
13121686 |
T |
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| Q |
513 |
tacggcaatataaaggattttggg |
536 |
Q |
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| T |
13121685 |
tacggcaatacaaaggattttggg |
13121662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 13004766 - 13004827
Alignment:
| Q |
151 |
tttgttaaggttagatcaaatggtttgcactg---cattgactggtagttggatgttgataa |
209 |
Q |
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| T |
13004766 |
tttgttaaggttagaccaaatggtttgcactggaatattgactggtagttggatgttgataa |
13004827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 13111645 - 13111607
Alignment:
| Q |
183 |
cattgactggtagttggatgttgataataactttcatag |
221 |
Q |
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| T |
13111645 |
cattgactggtagttggatgttgataacaacattcatag |
13111607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 447
Target Start/End: Original strand, 40302655 - 40302708
Alignment:
| Q |
393 |
tatccagctcaaggaccgactaatttgaggggtccaaatcctaccgtccatttgc |
447 |
Q |
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| T |
40302655 |
tatccagcccaaggaccgactaatttgaggggtcc-aatcccaccgtccaattgc |
40302708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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