View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_high_54 (Length: 227)
Name: NF7966_high_54
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_high_54 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 21193843 - 21193622
Alignment:
| Q |
6 |
ttttcatacaagaaagtgttcttacaatgtatcaatttgatcgtcaaagctagtttgaagaattaaaacaaattataagtgtgaatcaaaatttctagca |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193843 |
ttttcatacaagaaagtgttcttacaatgtatcaatttgattgtcaaagctagtttgaagaattaaaacaaattataagtgtgaatcaaaatttctagca |
21193744 |
T |
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| Q |
106 |
tgttagtttgaagaactaaattcagttatgagatggttctagttttaactagtggtcttggtggctaagaagcggaataatgagaagtcgaaggtttgat |
205 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
21193743 |
tgttagcttgaagaactaaattcagttatgagatgcttctagttttaactagtggtcttggtggctaagaagcggaataataagaagtcgaaggttcgat |
21193644 |
T |
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| Q |
206 |
attcagttctaacataatacta |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
21193643 |
attcagttctaacataatacta |
21193622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 27249616 - 27249395
Alignment:
| Q |
6 |
ttttcatacaagaaagtgttcttacaatgtatcaatttgatcgtcaaagctagtttgaagaattaaaacaaattataagtgtgaatcaaaatttctagca |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249616 |
ttttcatacaagaaagtgttcttacaatgtatcaatttgattgtcaaagctagtttgaagaattaaaacaaattataagtgtgaatcaaaatttctagca |
27249517 |
T |
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| Q |
106 |
tgttagtttgaagaactaaattcagttatgagatggttctagttttaactagtggtcttggtggctaagaagcggaataatgagaagtcgaaggtttgat |
205 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
27249516 |
tgttagcttgaagaactaaattcagttatgagatgcttctagttttaactagtggtcttggtggctaagaagcggaataataagaagtcgaaggttcgat |
27249417 |
T |
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| Q |
206 |
attcagttctaacataatacta |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
27249416 |
attcagttctaacataatacta |
27249395 |
T |
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