View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7966_high_57 (Length: 213)

Name: NF7966_high_57
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7966_high_57
NF7966_high_57
[»] chr2 (2 HSPs)
chr2 (16-148)||(37959399-37959531)
chr2 (148-189)||(14848597-14848638)
[»] chr5 (3 HSPs)
chr5 (153-189)||(19109470-19109506)
chr5 (153-189)||(40875660-40875696)
chr5 (153-186)||(11238901-11238934)
[»] chr6 (1 HSPs)
chr6 (148-189)||(22697365-22697407)
[»] scaffold0019 (2 HSPs)
scaffold0019 (45-98)||(150184-150237)
scaffold0019 (45-98)||(179024-179077)
[»] chr4 (1 HSPs)
chr4 (55-100)||(32263859-32263904)
[»] chr1 (2 HSPs)
chr1 (149-189)||(20446897-20446938)
chr1 (149-189)||(20532660-20532701)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 37959531 - 37959399
Alignment:
Q  16 tttggtgttgtgcggagaccgctggggcagagctatgagactgaaatctggtggctttaattagatttcagcgtcataacttttgctatttgcttggttt 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37959531 tttggtgttgtccggagaccgctggggcagagctatgagactgaaatctggtggctttaattagatttcagcgtcataacttttgctatttgcttggttt 37959432  T
Q  116 tagctcttggttggggttccactgttttagctt 148  Q
    |||| ||||||||||||||||||||||||||||    
T  37959431 tagcccttggttggggttccactgttttagctt 37959399  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 14848638 - 14848597
Alignment:
Q  148 tctaagcgtcttgctagagtttcggtttcaataatatttgcc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14848638 tctaagcgtcttgctagagtttcggtttcaataatatttgcc 14848597  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 19109506 - 19109470
Alignment:
Q  153 gcgtcttgctagagtttcggtttcaataatatttgcc 189  Q
    ||||||||| |||||||||||||||||||||||||||    
T  19109506 gcgtcttgcgagagtttcggtttcaataatatttgcc 19109470  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 40875696 - 40875660
Alignment:
Q  153 gcgtcttgctagagtttcggtttcaataatatttgcc 189  Q
    ||||||||||||||| |||||||||||||||||||||    
T  40875696 gcgtcttgctagagtatcggtttcaataatatttgcc 40875660  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 11238934 - 11238901
Alignment:
Q  153 gcgtcttgctagagtttcggtttcaataatattt 186  Q
    |||||||||||||||||||| |||||||||||||    
T  11238934 gcgtcttgctagagtttcggattcaataatattt 11238901  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 22697407 - 22697365
Alignment:
Q  148 tctaagcgtcttgctagagt-ttcggtttcaataatatttgcc 189  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  22697407 tctaagcgtcttgctagagggttcggtttcaataatatttgcc 22697365  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 150237 - 150184
Alignment:
Q  45 gagctatgagactgaaatctggtggctttaattagatttcagcgtcataacttt 98  Q
    |||||||| || |||||| ||||| |||||| ||||||||| ||||||||||||    
T  150237 gagctatgggaatgaaatatggtgcctttaactagatttcaacgtcataacttt 150184  T

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Target: scaffold0019; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 179077 - 179024
Alignment:
Q  45 gagctatgagactgaaatctggtggctttaattagatttcagcgtcataacttt 98  Q
    |||||||| || |||||| ||||| |||||| ||||||||| ||||||||||||    
T  179077 gagctatgggaatgaaatatggtgcctttaactagatttcaacgtcataacttt 179024  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 32263859 - 32263904
Alignment:
Q  55 actgaaatctggtggctttaattagatttcagcgtcataacttttg 100  Q
    |||||||||||||||| ||||||| |||| || |||||||||||||    
T  32263859 actgaaatctggtggcgttaattatattttagtgtcataacttttg 32263904  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 20446897 - 20446938
Alignment:
Q  149 ctaagcgtcttgcta-gagtttcggtttcaataatatttgcc 189  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  20446897 ctaagcgtcttgctaagagtttcggttccaataatatttgcc 20446938  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 20532660 - 20532701
Alignment:
Q  149 ctaagcgtcttgcta-gagtttcggtttcaataatatttgcc 189  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  20532660 ctaagcgtcttgctaagagtttcggttccaataatatttgcc 20532701  T

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