View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7966_high_58 (Length: 204)
Name: NF7966_high_58
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_high_58 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 22588268 - 22588442
Alignment:
| Q |
14 |
ctcttcctctcgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactggtgaaaaaataactaaatctttta |
113 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22588268 |
ctcttactcttgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactggtgaaaaaataactacatctttta |
22588367 |
T |
|
| Q |
114 |
caactattctagttaaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22588368 |
caactattctagttaaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattg |
22588442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 18366501 - 18366333
Alignment:
| Q |
20 |
ctctcgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactggtgaaaaaataactaaatcttttacaacta |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
18366501 |
ctcttgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactagtgaaaaaataactacatcttttacaacta |
18366402 |
T |
|
| Q |
120 |
ttctagttaaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattg |
188 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
18366401 |
ttctagttaaatcagagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatattg |
18366333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 15348031 - 15348092
Alignment:
| Q |
127 |
taaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattg |
188 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15348031 |
taaatcaaagacaaacaaatgagtcaatttatatgaataacaaataaaagttataaatattg |
15348092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 15437096 - 15437157
Alignment:
| Q |
127 |
taaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattg |
188 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15437096 |
taaatcaaagacaaacaaatgagtcaatttatatgaataacaaataaaagttataaatattg |
15437157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 15528400 - 15528461
Alignment:
| Q |
127 |
taaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattg |
188 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15528400 |
taaatcaaagacaaacaaatgagtcaatttatatgaataacaaataaaagttataaatattg |
15528461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University