View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_high_6 (Length: 528)
Name: NF7966_high_6
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 14 - 513
Target Start/End: Original strand, 2895496 - 2895995
Alignment:
| Q |
14 |
gttggaagttgaaccgctcgaagcaattcaccttgagttagatgaagaggaggatggtcctgtgtttgattggttttatgatcataagccactcgtgaaa |
113 |
Q |
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| T |
2895496 |
gttggaagttgaaccgctcgaagcaattcaccttgagttagatgaagaggaggatggtcctgtgtttgattggttttatgatcataagccactcgtgaaa |
2895595 |
T |
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| Q |
114 |
actaaatttgttaatgggctgagttatcgaaaatggtgtcttccgattctggtgatggaaactttgcataggcttgctgggcagcttttgtctgatttgt |
213 |
Q |
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| T |
2895596 |
actaaatttgttaatgggctgagttatcgaaaatggtgtcttccgattccggtgatggaaactttgcataggcttgctgggcagcttttgtctgatttgt |
2895695 |
T |
|
| Q |
214 |
gtgataggaattatttctatttgtttgatgtggagtccttttttacagctaaggctttgaatatgtgtatacctggtgggccgaagtttgagcctctgta |
313 |
Q |
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| T |
2895696 |
gtgataggaattatttctatttgtttgatgtggagtccttttttacagctaaggctttgaatatgtgtatacctggtgggccgaagtttgagcctctgta |
2895795 |
T |
|
| Q |
314 |
tcgtgacgcggagaaaggagatgaagattggaatgagtttaatgacattcacaaacttattataaggtcgaaacttaggactgagtataggattgctttt |
413 |
Q |
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| T |
2895796 |
tcgtgacgcggagaaaggagatgaagattggaatgagtttaatgacattcacaaacttattataaggtcaaaacttaggactgagtataggattgctttt |
2895895 |
T |
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| Q |
414 |
ccgtatctttataacgataggccgaggaaagtaaggcttggtgtttaccatactcccatggttgtgtatgtgaaggctgatgatcctgatttacctgcat |
513 |
Q |
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| T |
2895896 |
ccgcatctttataacgataggccgaggaaagtaaggcttggtgtttaccatactcccatggttgtgtatgtgaaggctgatgatcctgatttacctgcat |
2895995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 83 - 290
Target Start/End: Complemental strand, 44785437 - 44785230
Alignment:
| Q |
83 |
ttggttttatgatcataagccactcgtgaaaactaaatttgttaatgggctgagttatcgaaaatggtgtcttccgattctggtgatggaaactttgcat |
182 |
Q |
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| T |
44785437 |
ttggttttatgatcataagcctcttgtgaaaacaaagcttataaatggtcctagttaccgaaaatggcatctttctcttcctataatggcaactttgcat |
44785338 |
T |
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| Q |
183 |
aggcttgctgggcagcttttgtctgatttgtgtgataggaattatttctatttgtttgatgtggagtccttttttacagctaaggctttgaatatgtgta |
282 |
Q |
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| T |
44785337 |
cggcttgctgggcagcttctgtctgatctaagtgacagaaattatttctacttgtttgacatggagtccttttttacagcaaaggctttgaacatgtgca |
44785238 |
T |
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| Q |
283 |
tacctggt |
290 |
Q |
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| T |
44785237 |
tacctggt |
44785230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 288 - 481
Target Start/End: Complemental strand, 44784972 - 44784779
Alignment:
| Q |
288 |
ggtgggccgaagtttgagcctctgtatcgtgacgcggagaaaggagatgaagattggaatgagtttaatgacattcacaaacttattataaggtcgaaac |
387 |
Q |
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| T |
44784972 |
ggtgggcctaaatttgagcctctctaccgtgatatggagaaaggagatgaagactggaacgagtttaatgacatcaacaaactcattataaggtctccac |
44784873 |
T |
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| Q |
388 |
ttaggactgagtataggattgcttttccgtatctttataacgataggccgaggaaagtaaggcttggtgtttaccatactcccatggttgtgta |
481 |
Q |
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| T |
44784872 |
ttcggacagaatatagaatcgcctttccccatctttataacaacaggcctcgtaaagtaaggctttgtatttaccatacacccatggttatgta |
44784779 |
T |
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