View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_10 (Length: 514)
Name: NF7966_low_10
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 70 - 500
Target Start/End: Complemental strand, 54719168 - 54718735
Alignment:
| Q |
70 |
gaaattcccattcctctccaaagtcagatccaaattaacaacaacaacaa---tcacaacgacacattcaaccatcacgacgattttctcaaacaaatcc |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54719168 |
gaaattcccattcctctccaaagtcagatccaaattaacaacaacaacaacaatcacaacgacacattcaaccatcacgacgattttctcaaacaaatcc |
54719069 |
T |
|
| Q |
167 |
tctccaccaatcttcctccttcatggaacactctcgaccctaaccataacaaacccttattatgggaccccaattccgacgaaaatgttactttccctaa |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54719068 |
tctccaccaatcttcctccttcatggaacactctcgacccaaaccataacaaacccttattatgggaccccaattccgacgaaaatgtcactttccctaa |
54718969 |
T |
|
| Q |
267 |
ttacgatgaacaacacaacaaccttgcctctaagtttcgtaaccaccagatcactgtcaaaaccgccgccgctctcatgcttctcaccgccgattccgga |
366 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54718968 |
ttacgatgaacaacacaacaaccttgcctctaagtttcgtaaccaccagatcactgacaaaaccgccgccgctctcatgcttctcaccgccgattccgga |
54718869 |
T |
|
| Q |
367 |
ggtctcctccacatgcctgctgactttgactcctcccaaaacgacgtcgttaacacctcctccgtgagtatattcatattttctcactccgtttattaat |
466 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54718868 |
ggtctcctccacatgcctgctgactttgactcctcccaaaacgacgtcgttaacacctcctccgtgagtatattcatattttctcactccgtttattaat |
54718769 |
T |
|
| Q |
467 |
taacaactttatcgtttttattaccgaatatttt |
500 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
54718768 |
taacaactttatcgtttttattactgaatatttt |
54718735 |
T |
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