View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7966_low_14 (Length: 454)

Name: NF7966_low_14
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7966_low_14
NF7966_low_14
[»] chr1 (7 HSPs)
chr1 (29-293)||(33082502-33082765)
chr1 (221-278)||(23729467-23729524)
chr1 (231-277)||(23729966-23730012)
chr1 (232-293)||(43501194-43501255)
chr1 (320-389)||(15418264-15418334)
chr1 (283-327)||(36391367-36391411)
chr1 (283-327)||(49359631-49359675)
[»] chr8 (6 HSPs)
chr8 (320-437)||(37811206-37811323)
chr8 (206-292)||(13579123-13579208)
chr8 (197-293)||(13579717-13579812)
chr8 (229-293)||(10088659-10088724)
chr8 (294-327)||(36697685-36697718)
chr8 (295-327)||(9044190-9044222)
[»] chr3 (12 HSPs)
chr3 (206-293)||(46753247-46753334)
chr3 (206-278)||(22243109-22243181)
chr3 (206-293)||(46753932-46754019)
chr3 (231-278)||(53067749-53067796)
chr3 (206-278)||(22242908-22242980)
chr3 (317-393)||(16350-16426)
chr3 (283-327)||(29749347-29749391)
chr3 (283-327)||(47393885-47393929)
chr3 (283-329)||(20111913-20111959)
chr3 (283-329)||(54524698-54524744)
chr3 (206-279)||(29346380-29346453)
chr3 (231-278)||(53067219-53067267)
[»] chr2 (10 HSPs)
chr2 (153-293)||(23857108-23857249)
chr2 (210-293)||(23857837-23857920)
chr2 (206-293)||(15285649-15285734)
chr2 (206-293)||(22482868-22482954)
chr2 (206-295)||(22482184-22482271)
chr2 (283-327)||(30784868-30784912)
chr2 (283-325)||(6257781-6257823)
chr2 (283-327)||(25616842-25616886)
chr2 (206-293)||(1086775-1086864)
chr2 (283-321)||(37151906-37151944)
[»] chr7 (4 HSPs)
chr7 (148-271)||(22817180-22817303)
chr7 (206-278)||(45648934-45649006)
chr7 (295-327)||(19068469-19068501)
chr7 (283-327)||(43448531-43448575)
[»] chr4 (7 HSPs)
chr4 (153-293)||(33931912-33932047)
chr4 (362-432)||(42060377-42060446)
chr4 (321-393)||(42059577-42059649)
chr4 (283-327)||(49574756-49574800)
chr4 (210-279)||(33932648-33932717)
chr4 (295-327)||(43428480-43428512)
chr4 (295-336)||(56531817-56531858)
[»] scaffold0017 (1 HSPs)
scaffold0017 (232-278)||(31211-31257)
[»] chr6 (3 HSPs)
chr6 (232-293)||(1956871-1956932)
chr6 (283-329)||(12796040-12796086)
chr6 (283-327)||(32261212-32261256)
[»] chr5 (3 HSPs)
chr5 (242-293)||(13876145-13876196)
chr5 (295-327)||(14098500-14098532)
chr5 (283-326)||(26016226-26016269)
[»] scaffold1370 (1 HSPs)
scaffold1370 (295-329)||(206-240)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 293
Target Start/End: Complemental strand, 33082765 - 33082502
Alignment:
Q  29 ttttattatatctattcatgtacagaattaagaggcaagttggagaagaagatggacaaagcaagagcggggaaggattgttttgagagaaagagaaaga 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33082765 ttttattatatctattcatgtacagaattaagaggcaagttggagaagaagatggacaaagcaagagcggg-aaggattgttttgagagaaagagaaaga 33082667  T
Q  129 aattgattggtgtgggttagaaatttactttaagagacatgcatttaatgataattgaagaaagagagaggggtaaattttgtccaaaacaaataggtgc 228  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  33082666 aattgattggtgtgggttaaaaaattactttaagggacatgcatttaacgataattgaagaaagagaaaggggtaaattttgtccaatacaaataggtgc 33082567  T
Q  229 atgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  33082566 atgatgctaatgcacaccttctaaaattaaggtggatgtgtattagcattactcatatatatata 33082502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 23729524 - 23729467
Alignment:
Q  221 ataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 278  Q
    ||||||| | ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  23729524 ataggtgtaggatgctaatgcacaccttctaaaacaaaggtgggtgtgtattagcatt 23729467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 23729966 - 23730012
Alignment:
Q  231 gatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcat 277  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  23729966 gatgctaatgcacaccttctaaaataaaggtgggtgtgtattcgcat 23730012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 43501194 - 43501255
Alignment:
Q  232 atgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    |||||||||||||||||||||  ||  |||||||||||||||||||||  ||||||||||||    
T  43501194 atgctaatgcacaccttctaatttttgggtgggtgtgtattagcattactcatatatatata 43501255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 15418264 - 15418334
Alignment:
Q  320 atgagaggataaaataatggccaataaattaa-ttagatgccggtgattaaaagagaagttaaatgagtca 389  Q
    |||||||| | |||||||| ||| |||||||| ||||||  | |||||||||||||||||| |||||||||    
T  15418264 atgagagggtgaaataatgaccattaaattaacttagatcgctgtgattaaaagagaagtttaatgagtca 15418334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 36391411 - 36391367
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagagg 327  Q
    |||||||||| | |||| ||||||||||||||| |||||||||||    
T  36391411 atatatatatgatatttcaaatgagaggactttataaatgagagg 36391367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 49359631 - 49359675
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagagg 327  Q
    ||||||||| | ||||| ||||||||||| |||||||||||||||    
T  49359631 atatatatagagcatttcaaatgagaggagtttttaaatgagagg 49359675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 320 - 437
Target Start/End: Original strand, 37811206 - 37811323
Alignment:
Q  320 atgagaggataaaataatggccaataaattaattagatgccggtgattaaaagagaagttaaatgagtcatatgactctcttctctcccaaattcacttg 419  Q
    |||||||||||||||||||||||||  |||||||||||| |  ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  37811206 atgagaggataaaataatggccaatggattaattagatgtctatgattaaaagagaagtttaatgagtcatatgactctcttcttacccaaattcacttg 37811305  T
Q  420 ctactcttttcttctaat 437  Q
    ||||||||||||||||||    
T  37811306 ctactcttttcttctaat 37811323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 13579208 - 13579123
Alignment:
Q  206 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatat 292  Q
    ||||||||||| ||||| | || | ||||||||||||||||||||||||| || |||||||||||||||||||  ||||||||||||    
T  13579208 ttttgtccaaaccaaatggatgtaggatgctaatgcacaccttctaaaatcaaagtgggtgtgtattagcatt-cccatatatatat 13579123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 13579717 - 13579812
Alignment:
Q  197 aggggtaaattttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    |||||| | ||||||||||| ||||| |||| |  |||||||||||||||||||||||| || ||||||||| |||||||||  || ||||||||||    
T  13579717 aggggtcatttttgtccaaaccaaatgggtgtagaatgctaatgcacaccttctaaaatcaaagtgggtgtg-attagcattccccgtatatatata 13579812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 10088659 - 10088724
Alignment:
Q  229 atgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatcc-atatatatata 293  Q
    |||||||||||||||| ||||||||| | | ||||||||| |||| ||||| || |||||||||||    
T  10088659 atgatgctaatgcacatcttctaaaaatcaagtgggtgtgcattaacattaccctatatatatata 10088724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 36697685 - 36697718
Alignment:
Q  294 acattttaaatgagaggactttttaaatgagagg 327  Q
    |||||| |||||||||||||||||||||||||||    
T  36697685 acatttcaaatgagaggactttttaaatgagagg 36697718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 9044190 - 9044222
Alignment:
Q  295 cattttaaatgagaggactttttaaatgagagg 327  Q
    |||||||||||||| ||||||||||||||||||    
T  9044190 cattttaaatgagatgactttttaaatgagagg 9044222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 46753334 - 46753247
Alignment:
Q  206 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    ||||||| |||  ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  46753334 ttttgtctaaattaaataggtgtaggatgctaatgcacaccttttaaaattaaggtgggtgtgtattagcatttcccatatatatata 46753247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 22243109 - 22243181
Alignment:
Q  206 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 278  Q
    |||| |||||| ||| |||||| |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  22243109 ttttatccaaatcaattaggtgtatgatgctaatgcacaccttctaaaattgaagtgggtgtgtattagcatt 22243181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 46753932 - 46754019
Alignment:
Q  206 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    ||||||| |||  ||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||  | |||||||||||    
T  46753932 ttttgtctaaattaaataggagtaggatgctaatgcacactttctaaaattaaggtgggtgtgtattagcattcccgatatatatata 46754019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 53067749 - 53067796
Alignment:
Q  231 gatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 278  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53067749 gatgctaatgcacaccttctaaaattatggtgggtgtgtattagcatt 53067796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 22242980 - 22242908
Alignment:
Q  206 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 278  Q
    ||||||||||| ||| |||||| | |||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  22242980 ttttgtccaaatcaattaggtgtaggatgctaatgcacatcttctaaaattgaagtgggtatgtattagcatt 22242908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 393
Target Start/End: Original strand, 16350 - 16426
Alignment:
Q  317 taaatgagaggataaaataatggccaataaattaattagatgccggtgattaaaagagaagttaaatgagtcatatg 393  Q
    ||||||||||||||||||| || ||| |  |||| ||||||| | |||||||||||||||||| ||||||| |||||    
T  16350 taaatgagaggataaaatactgaccattggattagttagatggctgtgattaaaagagaagtttaatgagtgatatg 16426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 29749391 - 29749347
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagagg 327  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||    
T  29749391 atatatatatagcatttcaaatgagaggactttttaaatgagagg 29749347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 47393885 - 47393929
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagagg 327  Q
    |||||||||| |||||| ||||||||||||||| |||||||||||    
T  47393885 atatatatatgacatttcaaatgagaggactttataaatgagagg 47393929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 20111959 - 20111913
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagaggat 329  Q
    |||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  20111959 atatatatatgacatttcaaataagaggacttttaaaatgagaggat 20111913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 54524744 - 54524698
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagaggat 329  Q
    |||||||||  |||||| |||||||||||||||| ||||||||||||    
T  54524744 atatatataggacatttcaaatgagaggacttttaaaatgagaggat 54524698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 29346380 - 29346453
Alignment:
Q  206 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatta 279  Q
    |||||||||||   || ||||| |||||| ||||||||||||||||||||  | |||| |||| ||||||||||    
T  29346380 ttttgtccaaagtgaaaaggtgtatgatgttaatgcacaccttctaaaatccaagtggatgtgcattagcatta 29346453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 53067267 - 53067219
Alignment:
Q  231 gatgctaatgcacaccttctaaaa-ttaaggtgggtgtgtattagcatt 278  Q
    |||||||||||||||| ||||||| ||| ||||||||||| ||||||||    
T  53067267 gatgctaatgcacaccatctaaaaattatggtgggtgtgtgttagcatt 53067219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 153 - 293
Target Start/End: Complemental strand, 23857249 - 23857108
Alignment:
Q  153 ttactttaagagacat--gcatttaatgataattgaagaaagagagaggggtaaattttgtccaaaacaaataggtgcatgatgctaatgcacaccttct 250  Q
    ||||||||||||||||  || |||||||| ||||||||||||||| |||| ||  ||  |||||||  ||| ||||| |||||||||||||||||||| |    
T  23857249 ttactttaagagacatatgcttttaatgacaattgaagaaagagaaaggg-tactttaagtccaaagtaaaaaggtgtatgatgctaatgcacacctttt 23857151  T
Q  251 aaaattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    |||||| | || |||||| |||||||||| |||||||||||||    
T  23857150 aaaattcaagtaggtgtgcattagcattacccatatatatata 23857108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 23857837 - 23857920
Alignment:
Q  210 gtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    |||||||  ||| ||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||    
T  23857837 gtccaaagtaaaaaggtgtatgatgctaatgcacaccttctaaaattcaagtgggtgtgcattagcattacccatatatatata 23857920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 15285649 - 15285734
Alignment:
Q  206 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    ||||||||||| ||| |||||| | ||||||||||||||| |||||||||| | ||||||||||||||||||  ||||||||||||||    
T  15285649 ttttgtccaaatcaattaggtgtaggatgctaatgcacacattctaaaattgaagtgggtgtgtattagcat--tccatatatatata 15285734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 22482868 - 22482954
Alignment:
Q  206 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    ||||||| |||  ||||||| | | |||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||    
T  22482868 ttttgtctaaattaaataggagtaggatgctaatgcacaccttctaaaattaatgtgggtgtgtattagcatt-cccatatatatata 22482954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 22482271 - 22482184
Alignment:
Q  206 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatataac 295  Q
    ||||||| |||  ||||||||| | ||||||||||||||||||||||||||||| |||||||||||| ||||  ||| ||||||||||||    
T  22482271 ttttgtctaaattaaataggtgtaggatgctaatgcacaccttctaaaattaagatgggtgtgtattggcat--tccctatatatataac 22482184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 30784868 - 30784912
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagagg 327  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  30784868 atatatatatgacatttcaaatgagaggactttttaaatgagagg 30784912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 6257823 - 6257781
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgaga 325  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  6257823 atatatatatgacatttcaaatgagaggactttttaaatgaga 6257781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 25616842 - 25616886
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagagg 327  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||    
T  25616842 atatatatatggcatttcaaatgagaggactttttaaatgagagg 25616886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 1086864 - 1086775
Alignment:
Q  206 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttc--taaaattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    |||||| ||||||||| |||||  || |||||||||||||||||   ||||  |||||||||||||  ||| |||| |||||||||||||    
T  1086864 ttttgttcaaaacaaaaaggtgtttgttgctaatgcacaccttcataaaaaaaaaggtgggtgtgttatagtattacccatatatatata 1086775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 321
Target Start/End: Original strand, 37151906 - 37151944
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaat 321  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  37151906 atatatatatgacatttcaaatgagaggactttttaaat 37151944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 271
Target Start/End: Original strand, 22817180 - 22817303
Alignment:
Q  148 gaaatttactttaagagacatgcatttaatgataattgaagaaagagaga-ggggtaaattttgtccaaaacaaataggtgcatgatgctaatgcacacc 246  Q
    |||| |||||||||  ||||||  |||||||| |||| || ||||||||| ||||||  ||||||||||| |||||||||| ||||||| ||||||||||    
T  22817180 gaaaattactttaaaggacatgtgtttaatgacaattaaa-aaagagagaaggggtattttttgtccaaatcaaataggtgtatgatgccaatgcacacc 22817278  T
Q  247 ttctaaaattaaggtgggtgtgtat 271  Q
    |||||||||||| ||||||| ||||    
T  22817279 ttctaaaattaaagtgggtgcgtat 22817303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 45649006 - 45648934
Alignment:
Q  206 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 278  Q
    ||||||||||| ||| |||||| | ||||||| | |||||||||||||||| | |||||||||||||||||||    
T  45649006 ttttgtccaaatcaattaggtgtaggatgctactacacaccttctaaaattgaagtgggtgtgtattagcatt 45648934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 19068469 - 19068501
Alignment:
Q  295 cattttaaatgagaggactttttaaatgagagg 327  Q
    ||||| |||||||||||||||||||||||||||    
T  19068469 catttcaaatgagaggactttttaaatgagagg 19068501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 43448575 - 43448531
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagagg 327  Q
    |||||||||  |||||| |||||||||||| ||||||||||||||    
T  43448575 atatatataggacatttcaaatgagaggaccttttaaatgagagg 43448531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 293
Target Start/End: Complemental strand, 33932047 - 33931912
Alignment:
Q  153 ttactttaagagacatgcatttaatgataattgaagaaagagagaggggtaaattttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaa 252  Q
    |||||||||||  ||||| |||| ||| ||||||||||| ||     ||||  |||||| ||||  ||||||||| |  |||||||| ||||||||||||    
T  33932047 ttactttaagatgcatgcttttagtgacaattgaagaaaaag-----ggtactttttgttcaaagtaaataggtgtaacatgctaatacacaccttctaa 33931953  T
Q  253 aattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    |||| | |||||||||||||||||||| |||| ||||||||    
T  33931952 aattcatgtgggtgtgtattagcattacccatgtatatata 33931912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 432
Target Start/End: Complemental strand, 42060446 - 42060377
Alignment:
Q  362 gtgattaaaagagaagttaaatgagtcatatgactctcttctctcccaaattcacttgctactcttttctt 432  Q
    |||||||||||||||||| | |||||||||||| | ||||||| ||||||||||||| |||||||||||||    
T  42060446 gtgattaaaagagaagttta-tgagtcatatgattttcttctcacccaaattcactttctactcttttctt 42060377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 42059577 - 42059649
Alignment:
Q  321 tgagaggataaaataatggccaataaattaattagatgccggtgattaaaagagaagttaaatgagtcatatg 393  Q
    ||||| ||||||||| ||||||||  ||||||||||||   |||||||||||||||||| |||||||||||||    
T  42059577 tgagatgataaaatagtggccaatggattaattagatgaatgtgattaaaagagaagtttaatgagtcatatg 42059649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 49574800 - 49574756
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagagg 327  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||    
T  49574800 atatatatagaacatttcaaatgagaggactttttaaatgagagg 49574756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 33932648 - 33932717
Alignment:
Q  210 gtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatta 279  Q
    |||||||  ||| ||||| |||||||||||||||||||||||||||| |  |||||||  ||||||||||    
T  33932648 gtccaaagtaaaaaggtgtatgatgctaatgcacaccttctaaaattcaaatgggtgtacattagcatta 33932717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 43428480 - 43428512
Alignment:
Q  295 cattttaaatgagaggactttttaaatgagagg 327  Q
    |||||||||||||||||||||||||||||||||    
T  43428480 cattttaaatgagaggactttttaaatgagagg 43428512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 56531817 - 56531858
Alignment:
Q  295 cattttaaatgagaggactttttaaatgagaggataaaataa 336  Q
    ||||| |||| ||||||| |||||||||||||||||||||||    
T  56531817 catttcaaataagaggacattttaaatgagaggataaaataa 56531858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 31211 - 31257
Alignment:
Q  232 atgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 278  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31211 atgctaatgcacaccttctaaaattatggtgggtgtgtattagcatt 31257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 1956932 - 1956871
Alignment:
Q  232 atgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    |||||||| |||||||||||||||| | |||||||||||||||||||  |||||||||||||    
T  1956932 atgctaatacacaccttctaaaattgaagtgggtgtgtattagcattccccatatatatata 1956871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 12796086 - 12796040
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagaggat 329  Q
    ||||||| || |||||||||||| ||| |||||||||||||||||||    
T  12796086 atatatagatgacattttaaatgggagaactttttaaatgagaggat 12796040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 32261256 - 32261212
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagagg 327  Q
    ||||||||||  ||||| |||||||| ||||||||||||||||||    
T  32261256 atatatatatggcatttcaaatgagatgactttttaaatgagagg 32261212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 13876145 - 13876196
Alignment:
Q  242 acaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 293  Q
    ||||||||||||||| | ||||||||| |||| |||||||||||||||||||    
T  13876145 acaccttctaaaattcaagtgggtgtgcattaccattatccatatatatata 13876196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 14098500 - 14098532
Alignment:
Q  295 cattttaaatgagaggactttttaaatgagagg 327  Q
    |||||||||||||||||||||||||||||||||    
T  14098500 cattttaaatgagaggactttttaaatgagagg 14098532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 26016269 - 26016226
Alignment:
Q  283 atatatatataacattttaaatgagaggactttttaaatgagag 326  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||    
T  26016269 atatatatatggcatttcaaatgagaggactttttaaatgagag 26016226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 206 - 240
Alignment:
Q  295 cattttaaatgagaggactttttaaatgagaggat 329  Q
    ||||| |||||||||||||||||||||||||||||    
T  206 catttcaaatgagaggactttttaaatgagaggat 240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University