View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_16 (Length: 426)
Name: NF7966_low_16
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 41027466 - 41027202
Alignment:
| Q |
19 |
atagatcaagatcaacttctttgctc-aaaggttctgtttatctaaagagcaatgctatctcttatgatagatattgtcctgaatgactagagataatca |
117 |
Q |
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| T |
41027466 |
atagatcaagaccaacttctttgctctaaaggttctatttatctaaagaacaatgctat---ttatgatagatattatcctgaatgactagagataatca |
41027370 |
T |
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| Q |
118 |
attgtccaatgaaatttcttcctgacgacaattgaagggaaatggtggggcataatttagagaaaatattgagaacatgttatctcgtgaatttatcgga |
217 |
Q |
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| T |
41027369 |
attgtccaatgaaatttctatctgacgacaattcaagggagatggtggggcataatttaaagaaaatattgagaacatgttatctcatgagtctatcgaa |
41027270 |
T |
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| Q |
218 |
aaaataactgttgggttatatagcaatagtcttatctaaaataaaacactaatttcttattttagcaa |
285 |
Q |
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| T |
41027269 |
aaaataactgtcaggttatatagcaatagtcttatctaaaataaaacactaatttcttattttagcaa |
41027202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 41027202 - 41027102
Alignment:
| Q |
315 |
acgttaattaatttcttatgtctaaataaatgaattagagataaaataatcatatttagaaaacttcttgaacaagatgagtttaaatgcaaatcctctc |
414 |
Q |
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| T |
41027202 |
acgttaattaatttcctatgtctaaataaattaattagagataaaataatcatatttagaaaacttcttgaacaagatgagtttaaatgcaaatcctctc |
41027103 |
T |
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| Q |
415 |
t |
415 |
Q |
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| |
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| T |
41027102 |
t |
41027102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 17438911 - 17438803
Alignment:
| Q |
105 |
ctagagataatcaattgtccaatgaaatttcttcctgacgacaattgaagggaaatggtggggcataatttagagaaaatattgaga----acatgttat |
200 |
Q |
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| T |
17438911 |
ctagcgataatcaattgtccaattaaatttctttctggccacaaatcaagggaggtggtggggcataatttaaaggaaatattgagttcgtacatgttat |
17438812 |
T |
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| Q |
201 |
ctcgtgaat |
209 |
Q |
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| T |
17438811 |
ctcgtgaat |
17438803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 11168180 - 11168093
Alignment:
| Q |
120 |
tgtccaatgaaatttcttcctgacgacaattgaagggaaatggtggggcataatttagagaaaatattgagaacatgttatctcgtgaa |
208 |
Q |
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| T |
11168180 |
tgtccaatcaaatttctttctgaccacaaatcaagggaggtggtggggcatattttaaggaaaatatagag-acttgttatctagtgaa |
11168093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 557340 - 557219
Alignment:
| Q |
87 |
agatattgtcctgaatgactagagataatcaattgtccaatgaaatttcttcctgacgacaattgaagggaaatggtggggcataatttagagaaaatat |
186 |
Q |
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||||||| | |||||||||||| || |||||||||||||| || ||| ||||| |||| | |||||| ||||||| ||||||||||| |||||| |
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| T |
557340 |
agatattattctgaatgactagcaatgatcaattgtccaatcaatttttttccttggcacaaatcaagggaggtggtgggatataatttagaggaaatat |
557241 |
T |
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| Q |
187 |
tgagaacatgttatctcgtgaa |
208 |
Q |
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| T |
557240 |
taagtacaagttatctcgtgaa |
557219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 13775903 - 13775939
Alignment:
| Q |
302 |
taaactatcagccacgttaattaatttcttatgtcta |
338 |
Q |
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| T |
13775903 |
taaactatcagccacactaattaatttcttatgtcta |
13775939 |
T |
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