View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_17 (Length: 419)
Name: NF7966_low_17
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 33 - 403
Target Start/End: Original strand, 6171328 - 6171698
Alignment:
| Q |
33 |
tggctaagcttattttcttgtgctttttattagcaaatactattctatctcatgccattgctacaattacaaccaaacctcaaattagtgtccaatctat |
132 |
Q |
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| T |
6171328 |
tggctaagcttattttcttgtgctttttattagcaaatactattctatgtcatgtcatggctacaactacaaacaaacctcaaattagtgtccaatctat |
6171427 |
T |
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| Q |
133 |
ttcatcaccatcttcaaatgctccttctcaaagtcccattagtagccaaagaacaaatgaaaaagaatcctctattggaaggaaatttggtaagcaccaa |
232 |
Q |
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| T |
6171428 |
ttcatcaccatcttcaaatgctccttctcaaagtcccattagtagccaaagaacaaatgaaaaagaatcctctattggaaggaaatttggtaagcaccaa |
6171527 |
T |
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| Q |
233 |
cataatcatattattacatcaccaagtcctagccctctagaaggaggtattcttagtcatcaaaaaacctctattttggattctcaaggtcatattcatt |
332 |
Q |
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| T |
6171528 |
catgatcatattattacagcaccaagtcctagccctttagaaggaagtattcttagtcatcaaaaaacctctattttggattctcaaggtcatattcatt |
6171627 |
T |
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| Q |
333 |
tggtgannnnnnnnnnnnnnnnnncatttgataagtctatggctggtggaggagttattcttggaggactt |
403 |
Q |
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| T |
6171628 |
tggtgaatcatcatcatcatcatccatttgataagtctatggctggtggaggagttattcttggaggactt |
6171698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 4880189 - 4880259
Alignment:
| Q |
34 |
ggctaagcttattttcttgtgctttttattagcaaatactattctatctcatgccattgctacaattacaa |
104 |
Q |
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||||||| | |||||||||||||||| |||||||||||| | |||| ||||| ||| ||||||| ||||| |
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| T |
4880189 |
ggctaagttaattttcttgtgcttttcattagcaaatacactactatgtcatgtcatggctacaactacaa |
4880259 |
T |
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