View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_20 (Length: 398)
Name: NF7966_low_20
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 48877077 - 48876712
Alignment:
| Q |
18 |
attaagaagggtttactgacagaactcggcatggagcaggcactgtggcaatccggtgcattgcaaagaggttgctctgaacttcagcgagatggccagt |
117 |
Q |
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| T |
48877077 |
attaagaagggtttactgacagaactcgtcatggagcaggcactgtggcaatccggtgcattgcaaagaggttgctctgaacttcagcgagatcgccagt |
48876978 |
T |
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| Q |
118 |
aagttcatggctatacgaatagannnnnnnn-gtccagatgcagtaacatcaacagttcttctgttcacgttcttcagccaagcaaaactagccgaggga |
216 |
Q |
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| T |
48876977 |
aagttcatggctatacgaatagatttttttttgtccagatgcagtaacatcaacagttcttctgttcacgttcttcagccaagcaaaactagccgaggga |
48876878 |
T |
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| Q |
217 |
caagctttggccccatttggtaaaatcatatctactggcatttcttaataattttgcaacgagaaaaatgaatgcttgtgatacactcattgccaagtag |
316 |
Q |
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| T |
48876877 |
caagctttggccccatttggtaaa-tcatatctactggcatttcttaataattttgcaatgagaaaaatgaatgcttgtgatacactcattgccaagtag |
48876779 |
T |
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| Q |
317 |
tttatagttcttacatttttgttcaataattatcaaagtattttcgaagtaccaactttatgttctt |
383 |
Q |
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| T |
48876778 |
tttatagttcttacatttttgttcaataattatcaaagtattttcgaagtaccaactttatgttctt |
48876712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 8381353 - 8381420
Alignment:
| Q |
161 |
taacatcaacagttcttctgttcacgttcttcagccaagcaaaactagccgagggacaagctttggcc |
228 |
Q |
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| T |
8381353 |
taacatcaacagttcttctattcaagttcttgagccgatcaatgctagctgaggaacaagctttggcc |
8381420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 53456785 - 53456860
Alignment:
| Q |
153 |
agatgcagtaacatcaacagttcttctgttcacgttcttcagccaagcaaaactagccgagggacaagctttggcc |
228 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| || | ||||||||||||| |
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| T |
53456785 |
agatgcaataacatcaacagttcttctgttcacattcttcagccaagcaacactagctgaagaacaagctttggcc |
53456860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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