View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_21 (Length: 397)
Name: NF7966_low_21
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 109 - 381
Target Start/End: Complemental strand, 31730441 - 31730169
Alignment:
| Q |
109 |
tttttgtaattttaactttgttagcacatactacttgttatgtcaccaatcttcttaattgtaacgaatgaaaagcggtcattgatctgactcatctttc |
208 |
Q |
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| T |
31730441 |
tttttgaatttttaactttgtttcctcatacaccttcttattccaccaatcttcttaattgtaacgaatgaaaagtggtcaatgatctgactcatctttc |
31730342 |
T |
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| Q |
209 |
aatagaacccatattgtaaaattttatcaagtatcaagccactattctgaaaccaacactctatctagtctactcattgtgacaccatttcgatgtgctt |
308 |
Q |
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| T |
31730341 |
aatagaatccatattgtaaaattttatcaagtatcaagccactattctgaaaccaacactctatctagtctactcattgtgacaccatttcgatgtgctt |
31730242 |
T |
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| Q |
309 |
agatagaatgcctcccaagaagaggtaggtcaataaattccatataagccaagaaccgattgaaccactatat |
381 |
Q |
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| T |
31730241 |
agacagaatgcctcccaagaagaggcaggtcaataaattccatataagccaagaactgattgaaccactatat |
31730169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 31734361 - 31734295
Alignment:
| Q |
156 |
aatcttcttaattgtaacgaatgaaaagcggtcattgatctgactcatctttcaatagaacccatat |
222 |
Q |
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| T |
31734361 |
aatcttctgaattgtaacggatgaaaagcggtcaatgatctgacacatctcttaatagaacctatat |
31734295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 118 - 381
Target Start/End: Complemental strand, 6495679 - 6495416
Alignment:
| Q |
118 |
ttttaactttgttagcacatactacttgttatgtcaccaatcttcttaattgtaacgaatgaaaagcggtcattgatctgactcatctttcaatagaacc |
217 |
Q |
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| T |
6495679 |
ttttaactttgtttcctcatacaccttcttattccaccaatcttcttaattgtaaccaatgaaaagcggtcaatgatctgactcatctttgaatagaacc |
6495580 |
T |
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| Q |
218 |
catattgtaaaattttatcaagtatcaagccactattctgaaaccaacactctatctagtctactcattgtgacaccatttcgatgtgcttagatagaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||| |
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| T |
6495579 |
catattgtaaaattttatcaagtatcaagccactattctgaaaccaacactctatctagtttactcactgtgacaccatttcgatgtgcttagacaaaat |
6495480 |
T |
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| Q |
318 |
gcctcccaagaagaggtaggtcaataaattccatataagccaagaaccgattgaaccactatat |
381 |
Q |
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| T |
6495479 |
gcctcccaagaagaggtaggtcaataaattccatataagccaagaactgattgaaccactatat |
6495416 |
T |
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