View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_23 (Length: 397)
Name: NF7966_low_23
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 250 - 381
Target Start/End: Complemental strand, 2499993 - 2499862
Alignment:
| Q |
250 |
ttaccggtctaaaattaagagtatatgcttccttggcaaaattaatatgaagacacgagttattgaatcatttttgtgagaaagaaattttctcatttgt |
349 |
Q |
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| T |
2499993 |
ttaccggtctaaaattaagagtatatgcttccttggcaaaattaatatgaagacacgagttattgaatcatttttgtgagaaagaaattttctcatttgt |
2499894 |
T |
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| Q |
350 |
cccaaattttccatatgaattagcttttcaag |
381 |
Q |
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| T |
2499893 |
cccaaattttccatatgaattagcttttcaag |
2499862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 85 - 251
Target Start/End: Complemental strand, 2500275 - 2500105
Alignment:
| Q |
85 |
ctcaggtggtaacataaattacgtaatcattatgttaaaaaattacctc----gatgagtaaatgaggtgtgtaagactcgaattcaaacttctgcatat |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
2500275 |
ctcaggtggtaacataaattacgtaatcattatgttaaaatattacctcttaagatgaataaatgagatgtgtaagactcgaattcaaacttctacatat |
2500176 |
T |
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| Q |
181 |
attatacaatgtctataccaactacgataaactcatgaaaaattggcaataattggcattctataataatt |
251 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2500175 |
attatacaatgtttataccaactacggtaaactcatgaaaaattggcaataattggcattctataataatt |
2500105 |
T |
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