View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_26 (Length: 363)
Name: NF7966_low_26
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 37958989 - 37959315
Alignment:
| Q |
15 |
aagtgtgttgttggtaacaggttcacctaagtttaatgtttatgagactgattttggatttggaaaacctgttaaagttgaaatggtgcacccatttacg |
114 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37958989 |
aagtgtgttgttggtaacaggttcgcctaagtttaatgtttatgagactgattttggatttggaaaacctgctaaagttgaaatggtgcacccatttacg |
37959088 |
T |
|
| Q |
115 |
tgtatgtctattgctgaaagtgaagatagagaaggtggacttgaggttgggttggtattcaaatccgaggattttgaatatttctcttctatcattgaac |
214 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37959089 |
tgtatgtctattgctgaaagtgaaaatagagaaggtggacttgaggttgggttggtattcaaatccgaggattttaaatatttctcttctatcattgaac |
37959188 |
T |
|
| Q |
215 |
aaggactacaagctttgaaattttaattggttcgtgcatgttttgtcttttaatttcaatattgaatgggaaatgtagtacttcaacaattaatcatgaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
37959189 |
aaggactacaagctttgaaattttaattggttcgtgcatgttttgtcttttaatttcaatattgaatgggaaatgtagtactccaacaatgaatcatgaa |
37959288 |
T |
|
| Q |
315 |
ttgtgggttttgattgataatttgaga |
341 |
Q |
| |
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|||||||||||||||| |||||||||| |
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| T |
37959289 |
ttgtgggttttgattggtaatttgaga |
37959315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 37 - 341
Target Start/End: Original strand, 37953267 - 37953571
Alignment:
| Q |
37 |
tcacctaagtttaatgtttatgagactgattttggatttggaaaacctgttaaagttgaaatggtgcacccatttacgtgtatgtctattgctgaaagtg |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| | ||||||||||||||||||||||| |
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| T |
37953267 |
tcacctaagtttaatgtttatgagactgattttggatttggaaaaccagttaaagttgaaatgatgcattcattaaagtgtatgtctattgctgaaagtg |
37953366 |
T |
|
| Q |
137 |
aagatagagaaggtggacttgaggttgggttggtattcaaatccgaggattttgaatatttctcttctatcattgaacaaggactacaagctttgaaatt |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
37953367 |
gagatagagaaggtggacttgaggttgggttggcattcaaatctgaggattatgaatgtttctcttctgtcattcaacaaggactacaagctttgaaatt |
37953466 |
T |
|
| Q |
237 |
ttaattggttcgtgcatgttttgtcttttaatttcaatattgaatgggaaatgtagtacttcaacaattaatcatgaattgtgggttttgattgataatt |
336 |
Q |
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|||||||||||||| |||||| ||||||||| | ||| ||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |
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| T |
37953467 |
ttaattggttcgtgagtgttttatcttttaatgtgaattttggatgggaaatgtagtactccaacaatgaatcatggattgtgggttttgattgataatt |
37953566 |
T |
|
| Q |
337 |
tgaga |
341 |
Q |
| |
|
||||| |
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|
| T |
37953567 |
tgaga |
37953571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 37896213 - 37895993
Alignment:
| Q |
15 |
aagtgtgttgttggtaacaggttcacctaagtttaatgtttatgagactgattttggatttggaaaacctgttaaagttgaaatggtgcacccatttacg |
114 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||| | |
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| T |
37896213 |
aagtgtattgttggtaacaggatcacctaagtttaatgtttatgagactgattttggatttggtagacctgttaaagttgaaatggtgcattcgtttaag |
37896114 |
T |
|
| Q |
115 |
tgtatgtctattgctgaaagtgaagatagagaaggtggacttgaggttgggttggtattcaaatccgaggattttgaatatttctcttctatcattgaac |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || ||| | || ||||||||||| | | || | ||||||| |
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| T |
37896113 |
tgtatgtctattgctgaaagtggagatagagaaggtggtcttgaggttgggttggtgtttaaaagtggagaatttgaatatttttgtgctgtaattgaac |
37896014 |
T |
|
| Q |
215 |
aaggactacaagctttgaaat |
235 |
Q |
| |
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| ||||| |||||||||||| |
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| T |
37896013 |
atggacttgaagctttgaaat |
37895993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 39711977 - 39711793
Alignment:
| Q |
37 |
tcacctaagtttaatgtttatgagactgattttggatttggaaaacctgttaaagttgaaatggtgcacccatttacgtgtatgtctattgctgaaagtg |
136 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||| | || ||||| |||||||||||| |
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| T |
39711977 |
tcacctaagtttaatgtttatgagaccaattttggatttggaaaacctgttaaagttgagatggtgcatgcatttaagggtgtgtctcttgctgaaagtg |
39711878 |
T |
|
| Q |
137 |
aagatagagaaggtggacttgaggttgggttggtattcaaatccgaggattttgaatatttctcttctatcattgaacaaggact |
221 |
Q |
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|||| ||||||||||||||||| ||||||||||| | ||| ||||| |||||||||||||||||| | ||| |||||||||| |
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| T |
39711877 |
gagatggagaaggtggacttgagtttgggttggtacttaaaagtgaggagtttgaatatttctcttctcttattcaacaaggact |
39711793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 11527596 - 11527401
Alignment:
| Q |
40 |
cctaagtttaatgtttatgagactgattttggatttggaaaacctgttaaagttgaaatggtgcacccatttacgtgtatgtctattgctgaaagtgaag |
139 |
Q |
| |
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||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||| |||| || | | ||||| |||||||||||| || |
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| T |
11527596 |
cctaaatttaatgtttatgagaccgaatttggatttggaagacctgttaaagttgagatggtgcatccatctatggctgtgtctcttgctgaaagtggag |
11527497 |
T |
|
| Q |
140 |
atagagaaggtggacttgaggttgggttggtattcaaatccgaggattttgaatatttctcttctatcattgaacaaggactacaagctttgaaat |
235 |
Q |
| |
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|| ||||||||||||||||| ||||||||||| | ||| ||||| ||||||||||| |||||| ||||| |||||||||| ||||||| |||| |
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| T |
11527496 |
atggagaaggtggacttgagtttgggttggtacttaaaagtgaggaatttgaatatttatcttctctcattcaacaaggacttgaagctttaaaat |
11527401 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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