View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_28 (Length: 347)
Name: NF7966_low_28
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 40180736 - 40181051
Alignment:
| Q |
16 |
aagaataccggtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttagtgcaacatcgtattcagtgggagcagtg |
115 |
Q |
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| T |
40180736 |
aagaataccggtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttagtgcaacatcgtattcagtgggagcagtg |
40180835 |
T |
|
| Q |
116 |
gggcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgaggtg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
40180836 |
gggcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaattctacaaagtggataagattataaggtg |
40180935 |
T |
|
| Q |
216 |
gtgtttcaacaaatttagtttgacaagaggttttaataattttgagtaaaaaatgttgttgatggtgacgaggagtggcaaagtccatgaatttgatagc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40180936 |
gtgtttcaacaaatttagtttgacaagaggttttaataactttgagtaaaaaatgttgttgatggtgacgaggagtggcaaagtccatgaattcaatagc |
40181035 |
T |
|
| Q |
316 |
tgatttaatttggtac |
331 |
Q |
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||||||||||| |||| |
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| T |
40181036 |
tgatttaattttgtac |
40181051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 38605414 - 38605462
Alignment:
| Q |
231 |
tagtttgacaagaggttttaataattttgagtaaaaaatgttgttgatg |
279 |
Q |
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| T |
38605414 |
tagtttgacaggaggtttcaataattttgagtagaaaatgtggttgatg |
38605462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 131 - 279
Target Start/End: Complemental strand, 46358978 - 46358821
Alignment:
| Q |
131 |
acaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgagg---------tggtgttt |
221 |
Q |
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|||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| || |||| ||||||||||||||| ||| | || |
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| T |
46358978 |
acaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggctt |
46358879 |
T |
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| Q |
222 |
caacaaatttagtttgacaagaggttttaataattttgagtaaaaaatgttgttgatg |
279 |
Q |
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||||||||||||||||||||||||||| ||||| ||| ||| ||| ||||||||||| |
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| T |
46358878 |
caacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgatg |
46358821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 46359081 - 46359020
Alignment:
| Q |
26 |
gtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttag |
87 |
Q |
| |
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||||||||||||||||||||||| ||||| | ||||||| ||| ||| || |||||| |||| |
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| T |
46359081 |
gtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag |
46359020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 118 - 276
Target Start/End: Complemental strand, 44459420 - 44459253
Alignment:
| Q |
118 |
gcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgagg---- |
213 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| || |||| ||||||||||||||| |
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| T |
44459420 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
44459321 |
T |
|
| Q |
214 |
-----tggtgtttcaacaaatttagtttgacaagaggttttaataattttgagtaaaaaatgttgttg |
276 |
Q |
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||| | ||||||||||||||||||||||||||||| ||||| ||| ||| ||| |||||||| |
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| T |
44459320 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttg |
44459253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 118 - 276
Target Start/End: Complemental strand, 44466953 - 44466786
Alignment:
| Q |
118 |
gcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgagg---- |
213 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| || |||| ||||||||||||||| |
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| T |
44466953 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
44466854 |
T |
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| Q |
214 |
-----tggtgtttcaacaaatttagtttgacaagaggttttaataattttgagtaaaaaatgttgttg |
276 |
Q |
| |
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||| | ||||||||||||||||||||||||||||| ||||| ||| ||| ||| |||||||| |
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| T |
44466853 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttg |
44466786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 44460109 - 44460076
Alignment:
| Q |
131 |
acaagggattccagaacaggggtagtgatgagat |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
44460109 |
acaagggattccagaacaggggtagtgatgagat |
44460076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 44467642 - 44467609
Alignment:
| Q |
131 |
acaagggattccagaacaggggtagtgatgagat |
164 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44467642 |
acaagggattccagaacaggggtagtgatgagat |
44467609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 44460211 - 44460150
Alignment:
| Q |
26 |
gtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttag |
87 |
Q |
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|
||||||||||||||||||||||| ||||| | ||||||| ||| ||| || |||||| |||| |
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| T |
44460211 |
gtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag |
44460150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 44467744 - 44467683
Alignment:
| Q |
26 |
gtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttag |
87 |
Q |
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||||||||||||||||||||||| ||||| | ||||||| ||| ||| || |||||| |||| |
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| T |
44467744 |
gtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag |
44467683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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