View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_3 (Length: 636)
Name: NF7966_low_3
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 618
Target Start/End: Original strand, 2307359 - 2307959
Alignment:
| Q |
18 |
aagagatgcccttaactttgagtccatgatatgatgtaatattaggactcacattttattagcaatcttgattgaaaaaacaaagtaaaacttgataagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2307359 |
aagagatgcccttaactttgagtccatgatatgatgtaatattaggactcacattttattagcaatcttgattgaaaaaacaaagtaaaacttgataagc |
2307458 |
T |
|
| Q |
118 |
agaaaaatggggggannnnnnngttagagatatctaattgcacttgcagcacctatcttctgcagaaatatgcagtatacaactgatcaatgctaatttc |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2307459 |
agaaaaatggggggatttttttgttagagatatctaattgcacttgcagcacctatcttctgcagaaatatgcagtatacaactgatcaatgctaatttc |
2307558 |
T |
|
| Q |
218 |
gttnnnnnnnnttcctggcatgatgcatgcaaagggccataaacaaactagatcattgaagcattattagatttataagattgaatgtgccaagtgcaaa |
317 |
Q |
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||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2307559 |
gttaaaaaaaattcctggcatgatgcatgcaaagggccgtaaacaaactagatcattgaagcattattagatttataagattgaatgtgccaagtgcaaa |
2307658 |
T |
|
| Q |
318 |
caaaatacatgtactgtgctcttctttaattggagataatagataccaatgattnnnnnnnctagaagtgtattcaagcctggaatcattaacctctaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2307659 |
caaaatacatgtactgtgctcttctttaattggagataatagataccaatgattaaaaaaactagaagtgtattcaagcctggaatcattaacctctaaa |
2307758 |
T |
|
| Q |
418 |
gagactatttagttttaaaaactaaaagaacacagacataaacaaaatcattcagagaggggggaaagcagtaaagactgcaaaatctacacaaaagttc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2307759 |
gagactatttagttttaaaaactaaaagaacacagacataaacaaaatcattcagagaggggggaaagcagtaaagactgcaaaatctacacaaaagttc |
2307858 |
T |
|
| Q |
518 |
acatattccttcagagaactgcaataaagctgnnnnnnnttgattacctcagagccatcttgtgggatattctctgaatttacttgtgaggttgacacca |
617 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2307859 |
acatattccttcagagaactgcaataaacctgaaaaaaattgattacctcagagccatcttgtgggatattctctgaatttacttgtgaggttgacacca |
2307958 |
T |
|
| Q |
618 |
t |
618 |
Q |
| |
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| |
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| T |
2307959 |
t |
2307959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 98 - 618
Target Start/End: Original strand, 2316648 - 2317160
Alignment:
| Q |
98 |
caaagtaaaacttgataagcagaaaaatggggggannnnnnn-gttagagatatctaattgcacttgcagcacctatcttctgcagaaatatgcagtata |
196 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| || ||| ||||||||||||||||||||||||||| |
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| T |
2316648 |
caaagcaaaacttgataagcagaaaaatggggggaattttttagttagagatatctgattaca------gcatctatcttctgcagaaatatgcagtata |
2316741 |
T |
|
| Q |
197 |
caactgatcaatgctaatttcgttnnnnnnnnttcctggcatgatgcatgcaaagggccataaacaaactagatcattgaagcattattagatttataag |
296 |
Q |
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| |||| | |||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2316742 |
ccactgct----gctaatttcgttaaaaaaaattcctcccatgatgcatgcaaagggccgtaaacaaactagatcattgaagcattattagatttataag |
2316837 |
T |
|
| Q |
297 |
attgaatgtgccaagtgcaaacaaaatacatgtactgtgctcttctttaattggagataatagataccaatgattnnnnnnnctagaagtgtattcaagc |
396 |
Q |
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||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
2316838 |
attgaatttgccaagtgcaaacaaaatacacgtactgttctcttctttaattggagataatagatgccaatgattaaaaaaactagaagtgtattcaagc |
2316937 |
T |
|
| Q |
397 |
ctggaatcattaacctctaaagagactatttagttttaaaaact-aaaagaacacagacataaacaaaatcattcagagaggggggaaagcagtaaagac |
495 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2316938 |
ctggaatcattaacgtctaaagagactatttagtgttaaagactaaaaagaacacagacataaacaaaatcattcagagaggggggaaagcagaaaagac |
2317037 |
T |
|
| Q |
496 |
tgcaaaatctacacaaaagttcacatattccttcagagaactgcaataaagctgnnnnnnnttgattacctcagagccatcttgtgggatattctctgaa |
595 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2317038 |
cgcaaaatctacacaaaagttcacatattccttcagagaactgcaataaacctgaaaaaaattgattacctcagagccatcttgtgggatattctctgaa |
2317137 |
T |
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| Q |
596 |
tttacttgtgaggttgacaccat |
618 |
Q |
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||||||||||||||||||||||| |
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| T |
2317138 |
tttacttgtgaggttgacaccat |
2317160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 2316574 - 2316609
Alignment:
| Q |
63 |
gactcacattttattagcaatcttgattgaaaaaac |
98 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
2316574 |
gactcacattttattaacaatcttgattgaaaaaac |
2316609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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