View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_31 (Length: 327)
Name: NF7966_low_31
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 33 - 300
Target Start/End: Complemental strand, 55689863 - 55689608
Alignment:
| Q |
33 |
ataaaaaacgtttgcaaacagcaaaataaactcaatgtgtcgaaatttcaccgaggcagagtactatgatttcaccctttccatggaccccaaggacttc |
132 |
Q |
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| T |
55689863 |
ataagaaacgtttgcaaagagcaaaataaactcaatgtgttgaaatttcaccgaggcagagtactatgatttcaccctttccatggaccctaaggacttc |
55689764 |
T |
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| Q |
133 |
cctgttaatcataaaaagtcataaaaagcaggtatcaatcaagtaatacacaatacaaagcaatgaaccatcgttttcaacttctaatccatctcaaaca |
232 |
Q |
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| T |
55689763 |
cctgttaatcataaaaag----------caggtaccaatcaagtaacacacaatacaaagcaatgaaccatcgtt--caacttctaatccatctcaaaca |
55689676 |
T |
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| Q |
233 |
gaaaaacatcagcaggtacagccactgctgattagtgattacagactcatttatatcacaagttcata |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55689675 |
gaaaaacatcggcaggtacagccactgctgattagtgattacagactcatttatatcacaagttcata |
55689608 |
T |
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