View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7966_low_32 (Length: 317)
Name: NF7966_low_32
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 37202757 - 37203048
Alignment:
| Q |
18 |
attattagcaatatctccgtgcttgctgattatttttgctaatatgggcatgaattcctgcttcacttgatatccattaatcgtttcctcaggccggctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37202757 |
attattagcaatatctccgtgcttgctgattatttttgctaatatgggcatgaattcctgcttcacttgatatccattaatcgtttcctcaggccggctt |
37202856 |
T |
|
| Q |
118 |
ctcatttcggaatcgattccatcatcagcttgctgtccccacatttccaccatttcagttagttttagactaaaagatggggacgaacatccttcccttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37202857 |
ctcatttcggaatcgattccatcatcagcttgctgtccccacatttccaccatttcagttagttttagactaaaagatggggacgaacatccttcccttg |
37202956 |
T |
|
| Q |
218 |
aaatacacttccaatttgttgcttcctcaaacctatgtgaggcttgaatttcccctgccaatggctcctgctcaagaggtacactctctgct |
309 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37202957 |
aaatacacttccgatttgttgcttcctcaaacctatgtgaggcttgaatttcccctgccaatggctcctgctcaagaggtacactttctgct |
37203048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 274
Target Start/End: Original strand, 37183690 - 37183942
Alignment:
| Q |
22 |
ttagcaatatctccgtgcttgctgattatttttgctaatatgggcatgaattcctgcttcacttgatatccattaatcgtttcctcaggccggcttctca |
121 |
Q |
| |
|
|||||||||||||| ||||| | ||| |||||| ||| || ||||| |||||| | |||||||| |||||||||||||| |||||||||||||||| | |
|
|
| T |
37183690 |
ttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattaatcgtatcctcaggccggcttcgta |
37183789 |
T |
|
| Q |
122 |
tttcggaatcgattccatcatcagcttgctgtccccacatttccaccatttcagttagttttagactaaaagatggggacgaacatccttcccttgaaat |
221 |
Q |
| |
|
| ||||| | ||||| || ||| | || ||| || |||| |||||||||||| || |||||||||||||| |||||| |||||||||| |
|
|
| T |
37183790 |
catttgaatcaacctcatcaccatcttcatttctgaccatgtcaaccacttcagttagtttgaggctaaaagatggggatagacatccagcccttgaaat |
37183889 |
T |
|
| Q |
222 |
acacttccaatttgttgcttcctcaaacctatgtgaggcttgaatttcccctg |
274 |
Q |
| |
|
| ||||| |||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37183890 |
agacttcatatttgtcacttcctcaaacctatttgaggcttgaatttcccctg |
37183942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 274
Target Start/End: Original strand, 37194822 - 37195074
Alignment:
| Q |
22 |
ttagcaatatctccgtgcttgctgattatttttgctaatatgggcatgaattcctgcttcacttgatatccattaatcgtttcctcaggccggcttctca |
121 |
Q |
| |
|
|||||||||||||| ||||| | ||| |||||| ||| || ||||| |||||| | |||||||| |||||||||||||| |||||||||||||||| | |
|
|
| T |
37194822 |
ttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattaatcgtatcctcaggccggcttcgta |
37194921 |
T |
|
| Q |
122 |
tttcggaatcgattccatcatcagcttgctgtccccacatttccaccatttcagttagttttagactaaaagatggggacgaacatccttcccttgaaat |
221 |
Q |
| |
|
| ||||| | ||||| || ||| | || ||| || |||| |||||||||||| || |||||||||||||| |||||| |||||||||| |
|
|
| T |
37194922 |
catttgaatcaacctcatcaccatcttcatttctgaccatgtcaaccacttcagttagtttgaggctaaaagatggggatagacatccagcccttgaaat |
37195021 |
T |
|
| Q |
222 |
acacttccaatttgttgcttcctcaaacctatgtgaggcttgaatttcccctg |
274 |
Q |
| |
|
| ||||| |||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37195022 |
agacttcatatttgtcacttcctcaaacctatttgaggcttgaatttcccctg |
37195074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 37180642 - 37180719
Alignment:
| Q |
17 |
cattattagcaatatctccgtgcttgctgattatttttgctaatatgggcatgaattcctgcttcacttgatatccat |
94 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||| |||||| |||| | ||||||||||| ||||||||| |||||||| |
|
|
| T |
37180642 |
cattcttagctatatctccatgcttgctgataatttttcttaatgtaggcatgaattctagcttcacttcatatccat |
37180719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 37183971 - 37184027
Alignment:
| Q |
240 |
ttcctcaaacctatgtgaggcttgaatttcccctgccaatggctcctgctcaagagg |
296 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||| | ||||| |||||||| |
|
|
| T |
37183971 |
ttcctcaaacctatttgaggcttgaattttccctgacaaagactccttttcaagagg |
37184027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 37195103 - 37195159
Alignment:
| Q |
240 |
ttcctcaaacctatgtgaggcttgaatttcccctgccaatggctcctgctcaagagg |
296 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||| | ||||| |||||||| |
|
|
| T |
37195103 |
ttcctcaaacctatttgaggcttgaattttccctgacaaagactccttttcaagagg |
37195159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 413847 - 413807
Alignment:
| Q |
256 |
gaggcttgaatttcccctgccaatggctcctgctcaagagg |
296 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
413847 |
gaggcttgaatttcccctgccaatgcctcctgctcaagagg |
413807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 413950 - 413883
Alignment:
| Q |
162 |
ttccaccatttcagttagttttagactaaaagatggggacgaacatccttcccttgaaatacacttcc |
229 |
Q |
| |
|
|||| ||||| |||||||||| || ||||| || ||||| |||||||| |||||||||||||||||| |
|
|
| T |
413950 |
ttccgccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcc |
413883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 5365034 - 5364973
Alignment:
| Q |
217 |
gaaatacacttccaatttgttgcttcctcaaacctatgtgaggcttgaatttcccctgccaa |
278 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||| |||||||||| ||||| ||||||| |
|
|
| T |
5365034 |
gaaatagacttcatatttgttgcttcctcaaatctatttgaggcttgagtttcctctgccaa |
5364973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University