View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_34 (Length: 308)
Name: NF7966_low_34
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 22588268 - 22588552
Alignment:
| Q |
14 |
ctcttcctctcgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactggtgaaaaaataactaaatctttta |
113 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22588268 |
ctcttactcttgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactggtgaaaaaataactacatctttta |
22588367 |
T |
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| Q |
114 |
caactattctagttaaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22588368 |
caactattctagttaaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatt |
22588467 |
T |
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| Q |
214 |
taagaacattatgtcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactccaaac |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22588468 |
taagaacattatgtcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaac |
22588552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 18366501 - 18366223
Alignment:
| Q |
20 |
ctctcgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactggtgaaaaaataactaaatcttttacaacta |
119 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
18366501 |
ctcttgaatattacccctatgccttctgacattaaacctcaatatgctatataattcaaaaatgttactagtgaaaaaataactacatcttttacaacta |
18366402 |
T |
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| Q |
120 |
ttctagttaaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatttaagaa |
219 |
Q |
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| T |
18366401 |
ttctagttaaatcagagacaaacaaatgaatcaatttacatgaataacaaataaaagttgtaaatattgggggtgttgcattctccactccatttaaaaa |
18366302 |
T |
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| Q |
220 |
cattatgtcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactccaaac |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18366301 |
cattatgtcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactctaaac |
18366223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 30937179 - 30937099
Alignment:
| Q |
218 |
aacattatgtcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactccaaac |
298 |
Q |
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| T |
30937179 |
aacattatgtcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcagaggaactctaaac |
30937099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 30937208 - 30937174
Alignment:
| Q |
228 |
cctaaaaattgaattatagcttaacttaaaacatt |
262 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
30937208 |
cctaaaaattgaattatagcttaacttaaaacatt |
30937174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 127 - 293
Target Start/End: Original strand, 15348031 - 15348197
Alignment:
| Q |
127 |
taaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatttaagaacattatg |
226 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15348031 |
taaatcaaagacaaacaaatgagtcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatttaaaaacattatg |
15348130 |
T |
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| Q |
227 |
tcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15348131 |
tcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactc |
15348197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 127 - 293
Target Start/End: Original strand, 15437096 - 15437262
Alignment:
| Q |
127 |
taaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatttaagaacattatg |
226 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15437096 |
taaatcaaagacaaacaaatgagtcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatttaaaaacattatg |
15437195 |
T |
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| Q |
227 |
tcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15437196 |
tcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactc |
15437262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 127 - 293
Target Start/End: Original strand, 15528400 - 15528566
Alignment:
| Q |
127 |
taaatcaaagacaaacaaatgaatcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatttaagaacattatg |
226 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15528400 |
taaatcaaagacaaacaaatgagtcaatttatatgaataacaaataaaagttataaatattgggggtgttgcattctccactccatttaaaaacattatg |
15528499 |
T |
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| Q |
227 |
tcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15528500 |
tcctaaaaattgaattatagcttaacttaaaacattgtttctaaaaggttcaagagcaaaggaactc |
15528566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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