View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_36 (Length: 295)
Name: NF7966_low_36
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 26470266 - 26470001
Alignment:
| Q |
13 |
ttattctcaccggaacgttcgtgatgactatgtcttaagcttaatcattgataaacttgtaaaaaacataacagagctacaaagttgtctcgttcaaatg |
112 |
Q |
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| T |
26470266 |
ttattctcaccagaacgttcgtggtgattatgtcttaagcttaatcattgataaacttgtaaaaaacataacagagctacaaagttgtctcgttcaaatg |
26470167 |
T |
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| Q |
113 |
gatttgcatggcttattcccatcttctgatcatttatgactttttgattgaattcttttacaaactagaccagaactaacacagagaaaataatattgaa |
212 |
Q |
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| T |
26470166 |
gatttgcatggcttattcccattttctgatcatttatgac-ttttgattgaattcttttacaaactagaccagaactaacacagagaaaataatattgaa |
26470068 |
T |
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| Q |
213 |
cattc--ttcnnnnnnnnngggatatattgaacaatcttatcccttcatttcttctagtacgaaaac |
277 |
Q |
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| T |
26470067 |
cattcttttttttttttttgggatatattgaacaatcttatcccttcatttcttctagtaggaaaac |
26470001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 40271827 - 40271737
Alignment:
| Q |
17 |
tctcaccggaacgttcgtgatgactatgtcttaagcttaatcattgataaacttgtaaaaaacataacagagctacaaagttgtctcgttc |
107 |
Q |
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| T |
40271827 |
tctcaccagaacgtttgtaatgactatgccccaagcttaatcgttgataaacttgtaaaaagcatagcacagttacagagttgtctggttc |
40271737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 12580622 - 12580573
Alignment:
| Q |
32 |
cgtgatgactatgtcttaagcttaatcattgataaacttgtaaaaaacata |
82 |
Q |
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| T |
12580622 |
cgtgacgactatg-ctcaagcttaatcaatgataaacttgtaaaaaacata |
12580573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 28217493 - 28217432
Alignment:
| Q |
56 |
atcattgataaacttgtaaaaaacataacagagctacaaagttgtctcgttcaaatggattt |
117 |
Q |
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| T |
28217493 |
atcattgataaacttgtaaaaagcataacacaatcacatagttgtcttgttcaagtggattt |
28217432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 15048359 - 15048315
Alignment:
| Q |
149 |
tgactttttgattgaattcttttacaaactagaccagaactaaca |
193 |
Q |
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| T |
15048359 |
tgacttcttgaatgaattcttttacaaactagaccacaacaaaca |
15048315 |
T |
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