View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_37 (Length: 292)
Name: NF7966_low_37
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 34933739 - 34934001
Alignment:
| Q |
17 |
acttacttgttgcctttaatcttgaaccaagcctcagcacaatgcttatgagcagcagccaaatcatttttgcaaaaacaaccaagctccataggaattc |
116 |
Q |
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| T |
34933739 |
acttacttgttgcctttaatcttgaaccaagcctcagcacaatgcttatgagcagcagccaaatcatttttgcaaaaacaaccaagctccataggaattc |
34933838 |
T |
|
| Q |
117 |
cagattcatggtttgtcatatccatactaagatgacaaatcctacaatccctctccaccttatccaaatgcaccttaacatcagaaactacaccaccacc |
216 |
Q |
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| T |
34933839 |
cagattcatggtttgtcatatccatactaagatgacaaatcctacaatccctctccaccttatccaaatgcaccttaacatcagaaactacaccaccacc |
34933938 |
T |
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| Q |
217 |
atccagatccaactccacagaacattctgattcagatgaaccatctgaatcacaagatcctct |
279 |
Q |
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| T |
34933939 |
atccagatccaactccacagaacattctgattcagatgaaccatctgaatcacaagatcctct |
34934001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 193
Target Start/End: Original strand, 23949391 - 23949552
Alignment:
| Q |
32 |
ttaatcttgaaccaagcctcagcacaatgcttatgagcagcagccaaatcatttttgcaaaaacaaccaagctccataggaattccagattcatggtttg |
131 |
Q |
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| T |
23949391 |
ttaatcttgaaccaagcctcggcacaattcttatgagcagcagctaaatcctctttacaagaacagcccaattcaattggaggaccagattcatggctt- |
23949489 |
T |
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| Q |
132 |
tca-tatccatactaagatgacaaatcctacaatccctctccaccttatccaaatgcacctta |
193 |
Q |
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| T |
23949490 |
tcactctccaaacccatatgacaaatcctacaatctttctccactttagccaaatgcacctta |
23949552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 31221917 - 31222026
Alignment:
| Q |
17 |
acttacttgttgcctttaatcttgaaccaagcctcagcacaatgcttatgagcagcagccaaatcatttttgcaaaaacaaccaagctccataggaattc |
116 |
Q |
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||||||||||| || || | ||| |||||||| |||||||| || ||||| |||||||||||||||| ||| || |||| || || || |||||||| | |
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| T |
31221917 |
acttacttgttacccttgaccttaaaccaagcttcagcacattgtttatgggcagcagccaaatcatctttacaggaacatcctagttcaataggaatcc |
31222016 |
T |
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| Q |
117 |
cagattcatg |
126 |
Q |
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|||||||||| |
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| T |
31222017 |
cagattcatg |
31222026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 31222037 - 31222085
Alignment:
| Q |
122 |
tcatggtttgtcatatccatactaagatgacaaatcctacaatccctct |
170 |
Q |
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||||||||| ||||||||||||| || || |||||||||||||| |||| |
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| T |
31222037 |
tcatggtttctcatatccatactgaggtggcaaatcctacaatctctct |
31222085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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