View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_40 (Length: 281)
Name: NF7966_low_40
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 46938807 - 46938558
Alignment:
| Q |
16 |
ataaaacgtcacattatatatacccccaatttgttgttacattttattagagtcctaagctattgtcattatttttcataaggtgacacataacaacact |
115 |
Q |
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| T |
46938807 |
ataaaacgtcacattatatatacccccaatttgttgttacattttattagagtcctaagctattgtcattatttttcataaggtgacacataacaacact |
46938708 |
T |
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| Q |
116 |
cccttaattctctgaaatatttttacaaatgattaattatgtttaatttctaatcagatttctaaaccagggtttatcttcatcataccaccactgaata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46938707 |
cccttaattctctgaaatatttttacaaatgattaattatgtttaatttctaatcagatttctaaaccagggtttatcttcatcataccaccactgaata |
46938608 |
T |
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| Q |
216 |
attctaatttatcaatgtaacattgtcttgtccttattttgtgttgtgta |
265 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46938607 |
attctaatttatcaatgtaacattgtcttgtcctttttttgtgttgtgta |
46938558 |
T |
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