View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7966_low_45 (Length: 259)

Name: NF7966_low_45
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7966_low_45
NF7966_low_45
[»] scaffold0003 (1 HSPs)
scaffold0003 (12-208)||(8966-9158)
[»] chr7 (1 HSPs)
chr7 (12-208)||(16420254-16420446)
[»] chr8 (1 HSPs)
chr8 (12-208)||(5538319-5538515)
[»] chr3 (1 HSPs)
chr3 (48-207)||(19932296-19932453)
[»] chr1 (5 HSPs)
chr1 (48-207)||(18901508-18901672)
chr1 (136-207)||(51784714-51784783)
chr1 (48-87)||(51784794-51784833)
chr1 (19-61)||(18901445-18901487)
chr1 (19-52)||(51784859-51784892)
[»] chr5 (2 HSPs)
chr5 (63-207)||(37940370-37940512)
chr5 (19-61)||(37940550-37940592)


Alignment Details
Target: scaffold0003 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 8966 - 9158
Alignment:
Q  12 gtcgaagaatatgtgccattagatattactagctagtatttattagagtaatatataataagattagcaagaaagtataggaaaacaaaaggaagcatag 111  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  |||||||||||||||||||||    
T  8966 gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatata--ataagattagcaagaaagta--ggaaaacaaaaggaagcatag 9061  T
Q  112 aggaaaggaagtgattggcttgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtgg 208  Q
    || |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9062 agcaaaggaagtgattggcgtgtggaaataaagatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgg 9158  T

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Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 16420254 - 16420446
Alignment:
Q  12 gtcgaagaatatgtgccattagatattactagctagtatttattagagtaatatataataagattagcaagaaagtataggaaaacaaaaggaagcatag 111  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  |||||||||||||||||||||    
T  16420254 gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatata--ataagattagcaagaaagta--ggaaaacaaaaggaagcatag 16420349  T
Q  112 aggaaaggaagtgattggcttgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtgg 208  Q
    || |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16420350 agcaaaggaagtgattggcgtgtggaaataaagatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgg 16420446  T

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Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 5538515 - 5538319
Alignment:
Q  12 gtcgaagaatatgtgccattagatattactagctagtatttattagagtaatatata--ataagattagcaagaaagtataggaaaacaaaaggaagcat 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  |||||||||||||||||||    
T  5538515 gtcgaaaaatatgtgccattagatattactagctagtatttattagagtaatatatataataagattagcaagaaagta--ggaaaacaaaaggaagcat 5538418  T
Q  110 agaggaaa-ggaagtgattggcttgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtgg 208  Q
    |||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  5538417 agagcaaaaggaagtgattg-cgtgtggaaataaacatccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagctagtgg 5538319  T

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Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 19932296 - 19932453
Alignment:
Q  48 tatttattagagtaatatataataagattagcaagaaagtataggaaaacaaaaggaagcatagaggaaaggaagtgattggcttgtggaaataaacatc 147  Q
    ||||||||| |||||||||||||||||||||||| ||||||  ||||| ||||||||||||||||| ||||||| |||||| || |||||||||||||||    
T  19932296 tatttattaaagtaatatataataagattagcaataaagta--ggaaagcaaaaggaagcatagagaaaaggaactgattgactagtggaaataaacatc 19932393  T
Q  148 cacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtg 207  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  19932394 cacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg 19932453  T

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Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 18901508 - 18901672
Alignment:
Q  48 tatttattagagtaatatataataagattagcaagaaagtataggaaaacaaaaggaagcatagaggaaaggaagtgattggcttgtggaaa-------t 140  Q
    ||||||||| |||||||||||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||| |||||| || |||||||       |    
T  18901508 tatttattaaagtaatatataataagattagcaagaaagta--ggaaagcaaaaggaagcatagagaaaaggaactgattgactggtggaaataaacatt 18901605  T
Q  141 aaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  18901606 aaacatccacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg 18901672  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 51784783 - 51784714
Alignment:
Q  136 gaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgtgaggaaataagttagtg 207  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  51784783 gaaataaacat--acgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg 51784714  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 51784833 - 51784794
Alignment:
Q  48 tatttattagagtaatatataataagattagcaagaaagt 87  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  51784833 tatttattaaagtaatatataataagattagcaagaaagt 51784794  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 18901445 - 18901487
Alignment:
Q  19 aatatgtgccattagatattactagctagtatttattagagta 61  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  18901445 aatatgtgacactagatattactagctagtatttattagagta 18901487  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 51784892 - 51784859
Alignment:
Q  19 aatatgtgccattagatattactagctagtattt 52  Q
    ||||||||||| ||||||||||||||||||||||    
T  51784892 aatatgtgccactagatattactagctagtattt 51784859  T

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Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 63 - 207
Target Start/End: Complemental strand, 37940512 - 37940370
Alignment:
Q  63 tatataataagattagcaagaaagtataggaaaacaaaaggaagcatagaggaaaggaagtgattggcttgtggaaataaacatccacgtttcttcccaa 162  Q
    ||||||||||||||||||||||||||  || || ||||| |||||||||   ||||||| |||||  || ||||||||||||||||||||||||||||||    
T  37940512 tatataataagattagcaagaaagta--ggtaagcaaaaagaagcataggaaaaaggaactgattaactagtggaaataaacatccacgtttcttcccaa 37940415  T
Q  163 tcccattttccactatgttccatattgtgaggaaataagttagtg 207  Q
    || ||||||||||||||||||||||| | ||||||||||||||||    
T  37940414 tctcattttccactatgttccatatttttaggaaataagttagtg 37940370  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 37940592 - 37940550
Alignment:
Q  19 aatatgtgccattagatattactagctagtatttattagagta 61  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  37940592 aatatgtgccactagatattactagctagtatttattagagta 37940550  T

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