View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7966_low_46 (Length: 257)

Name: NF7966_low_46
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7966_low_46
NF7966_low_46
[»] chr2 (8 HSPs)
chr2 (64-243)||(5563055-5563235)
chr2 (54-126)||(40095375-40095447)
chr2 (54-123)||(13696965-13697035)
chr2 (55-124)||(14242523-14242593)
chr2 (54-123)||(17823691-17823761)
chr2 (62-123)||(36272661-36272723)
chr2 (62-124)||(32599247-32599310)
chr2 (66-126)||(33555359-33555420)
[»] chr8 (5 HSPs)
chr8 (54-126)||(43065902-43065975)
chr8 (54-125)||(4076767-4076839)
chr8 (54-124)||(14342186-14342257)
chr8 (44-94)||(44081166-44081216)
chr8 (54-124)||(1993638-1993709)
[»] chr4 (7 HSPs)
chr4 (54-126)||(39631007-39631080)
chr4 (54-124)||(17044114-17044185)
chr4 (54-123)||(45995895-45995965)
chr4 (53-123)||(3287190-3287262)
chr4 (57-123)||(37605691-37605758)
chr4 (54-123)||(25164471-25164541)
chr4 (62-102)||(25783931-25783971)
[»] chr3 (2 HSPs)
chr3 (54-123)||(38247910-38247979)
chr3 (54-123)||(48034808-48034878)
[»] chr6 (3 HSPs)
chr6 (54-126)||(14313984-14314056)
chr6 (54-124)||(9045944-9046015)
chr6 (54-123)||(34792651-34792721)
[»] chr5 (4 HSPs)
chr5 (44-123)||(1447748-1447827)
chr5 (54-124)||(36890488-36890559)
chr5 (54-126)||(11247304-11247377)
chr5 (54-124)||(13988359-13988430)
[»] chr1 (7 HSPs)
chr1 (54-127)||(1995064-1995138)
chr1 (62-126)||(2402922-2402987)
chr1 (54-126)||(44797464-44797537)
chr1 (54-124)||(40030898-40030969)
chr1 (54-102)||(1673481-1673529)
chr1 (54-124)||(27325626-27325698)
chr1 (55-126)||(32267462-32267534)
[»] scaffold0933 (1 HSPs)
scaffold0933 (54-126)||(3053-3126)
[»] chr7 (4 HSPs)
chr7 (54-126)||(46576239-46576312)
chr7 (54-125)||(30922708-30922780)
chr7 (54-124)||(33496611-33496682)
chr7 (54-119)||(48460764-48460830)
[»] scaffold0533 (1 HSPs)
scaffold0533 (54-123)||(10232-10301)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 64 - 243
Target Start/End: Original strand, 5563055 - 5563235
Alignment:
Q  64 actctcacatagaatggtacaatgtgtatatagaaaa-aatgtatacataaaacattatcctttcatgatatgtatgtatgtacgtatttgttttcatcc 162  Q
    |||||||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5563055 actctcacataggatagtacaatgtgtgtatagaaaaaaatgtatacataaaacattatcctttcatgatatgtatgcatgtacgtatttgttttcatcc 5563154  T
Q  163 tcccaaaattgtccatttgttttttatccctatatatattgaacataattttgttattccttgacatttcttcaaaacata 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5563155 tcccaaaattgtccatttgttttttatccctatatatattgaacataattttgttattccttgacatttcttcaaaacata 5563235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 40095375 - 40095447
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaatgtatacataaaacattatccttt 126  Q
    ||||||| |||||||| |||||| ||||||| ||| | ||| |||||||||| ||||| ||||||||||||||    
T  40095375 tctctcacacactctcgcatagagtggtacagtgtatgtatggaaaaaatgtgtacatgaaacattatccttt 40095447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 13697035 - 13696965
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcc 123  Q
    ||||||| |||||||||||| || ||||||||||||| ||| ||||||| ||| ||||| |||||||||||    
T  13697035 tctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 13696965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 14242593 - 14242523
Alignment:
Q  55 ctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcct 124  Q
    |||||| |||||||||||| || ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||    
T  14242593 ctctcagacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 14242523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 17823691 - 17823761
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcc 123  Q
    ||||||| |||||||||||| || ||||||||||||| ||| ||||||| ||| ||||| |||||||||||    
T  17823691 tctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 17823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 36272723 - 36272661
Alignment:
Q  62 acactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcc 123  Q
    |||||||||||| || ||||||||||||||||| ||||||| ||| ||||| |||||||||||    
T  36272723 acactctcacatggagtggtacaatgtgtatatggaaaaaagtgtgtacatgaaacattatcc 36272661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 32599310 - 32599247
Alignment:
Q  62 acactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcct 124  Q
    |||||||||||| || ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||    
T  32599310 acactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 32599247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 33555420 - 33555359
Alignment:
Q  66 tctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatccttt 126  Q
    |||||||| || ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||||    
T  33555420 tctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccttt 33555359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 43065975 - 43065902
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatag-aaaaaatgtatacataaaacattatccttt 126  Q
    ||||||| |||||||||||| |||||||||||||| | ||| | ||||||||| ||||||||||||||||||||    
T  43065975 tctctcacacactctcacatggaatggtacaatgtatgtatggaaaaaaatgtgtacataaaacattatccttt 43065902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 4076839 - 4076767
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcctt 125  Q
    ||||||| ||||||||||||||| ||||||||| ||| ||| ||||||| ||| ||||| |||||||||||||    
T  4076839 tctctcacacactctcacatagagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 4076767  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 14342257 - 14342186
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcct 124  Q
    ||||||| |||||||||||| || ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||    
T  14342257 tctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 14342186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 44081166 - 44081216
Alignment:
Q  44 atatttatcatctctcatacactctcacatagaatggtacaatgtgtatat 94  Q
    |||||||  ||||||||||||||||||||||| |||||||||||| |||||    
T  44081166 atatttaatatctctcatacactctcacataggatggtacaatgtatatat 44081216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 1993709 - 1993638
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatat-agaaaaaatgtatacataaaacattatcct 124  Q
    ||||||||||||||||||||  ||||||||||||||| ||| | ||||| ||| ||||  ||||||||||||    
T  1993709 tctctcatacactctcacatgaaatggtacaatgtgtgtatgaaaaaaagtgtgtacacgaaacattatcct 1993638  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 39631080 - 39631007
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatccttt 126  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||||||| | | ||||| ||||||||||||||    
T  39631080 tctctcacacactctcacatagagtggtacaatgtgtatatggaaaaaagtatgtacatgaaacattatccttt 39631007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 17044114 - 17044185
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcct 124  Q
    ||||||| |||||||||||| || ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||    
T  17044114 tctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 17044185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 45995965 - 45995895
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatag-aaaaaatgtatacataaaacattatcc 123  Q
    ||||||| |||||||||||| || ||||||||||||| ||| | ||||||||| ||||| |||||||||||    
T  45995965 tctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaaatgtgtacatgaaacattatcc 45995895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 3287190 - 3287262
Alignment:
Q  53 atctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa--tgtatacataaaacattatcc 123  Q
    |||||||| |||||||||||| || ||||||||||||| ||| |||||||  ||| ||||| |||||||||||    
T  3287190 atctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaaagtgtgtacatgaaacattatcc 3287262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 37605758 - 37605691
Alignment:
Q  57 ctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcc 123  Q
    |||| |||||||||||| || ||||||||||||| ||| ||||||| ||| ||||| |||||||||||    
T  37605758 ctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 37605691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 25164541 - 25164471
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcc 123  Q
    ||||||| |||||||||||| || ||||||||||||| |||  |||||| ||| ||||| |||||||||||    
T  25164541 tctctcacacactctcacatggagtggtacaatgtgtgtatgcaaaaaagtgtgtacatgaaacattatcc 25164471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 25783971 - 25783931
Alignment:
Q  62 acactctcacatagaatggtacaatgtgtatatagaaaaaa 102  Q
    |||||||||||||| ||||||||| |||| |||||||||||    
T  25783971 acactctcacataggatggtacaacgtgtgtatagaaaaaa 25783931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 38247910 - 38247979
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaatgtatacataaaacattatcc 123  Q
    ||||||| ||||||||||||||| ||||||||||||| ||| |||||| ||| ||||| |||||||||||    
T  38247910 tctctcacacactctcacatagagtggtacaatgtgtgtatggaaaaagtgtgtacatgaaacattatcc 38247979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 48034878 - 48034808
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcc 123  Q
    ||||||| ||||||||||||  | ||||||||||||| ||| ||||||| ||| |||||||||||||||||    
T  48034878 tctctcacacactctcacatgaagtggtacaatgtgtgtatggaaaaaagtgtgtacataaaacattatcc 48034808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 14314056 - 14313984
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaatgtatacataaaacattatccttt 126  Q
    ||||||| ||||||||||||| | ||||||||||||| ||| |||||| ||| ||||| ||||||||||||||    
T  14314056 tctctcacacactctcacataaagtggtacaatgtgtgtatggaaaaagtgtgtacatgaaacattatccttt 14313984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 9045944 - 9046015
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatat-agaaaaaatgtatacataaaacattatcct 124  Q
    ||||||| |||||||||||| || ||||||||||||| ||| | ||||| ||| ||||| ||||||||||||    
T  9045944 tctctcacacactctcacatggagtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatcct 9046015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 34792721 - 34792651
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcc 123  Q
    ||||||| |||||||||||| || ||||||||||||| |||  |||||| ||| ||||| |||||||||||    
T  34792721 tctctcacacactctcacatggagtggtacaatgtgtgtatgcaaaaaagtgtgtacatgaaacattatcc 34792651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 1447827 - 1447748
Alignment:
Q  44 atatttatcatctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaatgtatacataaaacattatcc 123  Q
    ||||||||  |||||||||||||||||||| | ||||||||| |||| ||||||||||| || | ||| |||||||||||    
T  1447827 atatttattgtctctcatacactctcacattggatggtacaacgtgtgtatagaaaaaaggtgttcatgaaacattatcc 1447748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 36890488 - 36890559
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcct 124  Q
    |||||||||||||||||||| || ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||    
T  36890488 tctctcatacactctcacatcgagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 36890559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 11247304 - 11247377
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatccttt 126  Q
    ||||||| |||||||||||| || ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||||    
T  11247304 tctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccttt 11247377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 13988359 - 13988430
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcct 124  Q
    ||||||| |||||||||||| || ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||    
T  13988359 tctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 13988430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 1995064 - 1995138
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcctttc 127  Q
    ||||||| |||||||||||| || ||||||||||||| ||| ||||||| ||| ||||| |||||||||||||||    
T  1995064 tctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctttc 1995138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 2402987 - 2402922
Alignment:
Q  62 acactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatccttt 126  Q
    |||||||||||| |||||||||||||||| ||| ||||||| ||| ||||| ||||||||||||||    
T  2402987 acactctcacatggaatggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccttt 2402922  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 44797537 - 44797464
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatccttt 126  Q
    ||||||| ||||||||||||  | ||||||||||||| ||||||||||| ||| ||||| ||||||||||||||    
T  44797537 tctctcacacactctcacatgaagtggtacaatgtgtgtatagaaaaaagtgtgtacatgaaacattatccttt 44797464  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 40030898 - 40030969
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatat-agaaaaaatgtatacataaaacattatcct 124  Q
    ||||||| |||||||||||| || ||||||||||||| ||| | ||||| ||| ||||| ||||||||||||    
T  40030898 tctctcacacactctcacatggagtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatcct 40030969  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 1673481 - 1673529
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa 102  Q
    ||||||||||||||| ||||  ||||||||||||||| ||| |||||||    
T  1673481 tctctcatacactcttacatgaaatggtacaatgtgtgtatggaaaaaa 1673529  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 27325698 - 27325626
Alignment:
Q  54 tctctcatacactct-cacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcct 124  Q
    ||||||| ||||||| ||||| || ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||    
T  27325698 tctctcacacactcttcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 27325626  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 32267534 - 32267462
Alignment:
Q  55 ctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatccttt 126  Q
    |||||| |||||||||||| || | ||||||||||| ||| ||||||| ||| ||||| ||| ||||||||||    
T  32267534 ctctcacacactctcacatggagtagtacaatgtgtgtatggaaaaaagtgtgtacatgaaatattatccttt 32267462  T

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Target: scaffold0933 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 3126 - 3053
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatccttt 126  Q
    |||||||||||||||||||| || ||||||||||||| ||| ||||||| ||| || || ||||||||||||||    
T  3126 tctctcatacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtatatgaaacattatccttt 3053  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 46576312 - 46576239
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatccttt 126  Q
    ||||||| |||||||||||| || ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||||    
T  46576312 tctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccttt 46576239  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 30922780 - 30922708
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcctt 125  Q
    ||||||| |||||||||||| || ||||||||||||| ||| ||||||| | | ||||| |||||||||||||    
T  30922780 tctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtatgtacatgaaacattatcctt 30922708  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 33496611 - 33496682
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacattatcct 124  Q
    ||||||| |||||||||||| || ||||| ||||||| ||| ||||||| ||| ||||| ||||||||||||    
T  33496611 tctctcacacactctcacatggagtggtataatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 33496682  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 48460764 - 48460830
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaa-tgtatacataaaacatt 119  Q
    ||||||| |||||||||||| || ||||||||||||| | | ||||||| ||| |||||||||||||    
T  48460764 tctctcacacactctcacatggagtggtacaatgtgtgtgtggaaaaaagtgtgtacataaaacatt 48460830  T

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Target: scaffold0533 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 10301 - 10232
Alignment:
Q  54 tctctcatacactctcacatagaatggtacaatgtgtatatagaaaaaatgtatacataaaacattatcc 123  Q
    ||||||| | |||||||||| || ||||||||||||| ||| |||||| ||  ||||| |||||||||||    
T  10301 tctctcacatactctcacatggagtggtacaatgtgtgtatggaaaaagtgcgtacatgaaacattatcc 10232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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