View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_47 (Length: 256)
Name: NF7966_low_47
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 98 - 250
Target Start/End: Original strand, 40317000 - 40317151
Alignment:
| Q |
98 |
aaaaattaatatgagattagggattaatttttaaggggagataggtgtatttttctcaaagctgacaggaggtgtaattcgatattatgggatgaaatga |
197 |
Q |
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| T |
40317000 |
aaaaattaatatgagattagggattattttttaaggggagataggtgtatttttctcaaagctgacaggaggtgtaattcgatattagggggtg-aatga |
40317098 |
T |
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| Q |
198 |
gtatcaatcgaacatgaatcaactaaatttgttcagagttcacattgaattga |
250 |
Q |
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| T |
40317099 |
gtatcaatcgaacatgaatcaactaaatttgttcagagttcacattgaattga |
40317151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 40316751 - 40316815
Alignment:
| Q |
18 |
caaagtaactaagtcataaatggaacaatcaaattaaaatgagaagaggaagagaaggaataaga |
82 |
Q |
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| T |
40316751 |
caaagtaactaagtcataaatggaacaatcaaattaaaatgagaagaggaggagaaggaataaga |
40316815 |
T |
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