View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7966_low_52 (Length: 246)

Name: NF7966_low_52
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7966_low_52
NF7966_low_52
[»] chr2 (7 HSPs)
chr2 (19-222)||(40109914-40110117)
chr2 (19-222)||(19469260-19469463)
chr2 (19-222)||(18845006-18845209)
chr2 (19-222)||(11579913-11580116)
chr2 (19-222)||(12562586-12562789)
chr2 (53-211)||(18634563-18634721)
chr2 (37-76)||(7300260-7300299)
[»] chr7 (5 HSPs)
chr7 (19-223)||(19914249-19914453)
chr7 (19-155)||(35552847-35552983)
chr7 (19-157)||(44432980-44433118)
chr7 (19-222)||(20348528-20348731)
chr7 (20-76)||(39474540-39474596)
[»] chr5 (4 HSPs)
chr5 (19-222)||(41612264-41612467)
chr5 (19-222)||(17431076-17431279)
chr5 (37-222)||(379495-379680)
chr5 (19-114)||(4421391-4421486)
[»] chr6 (3 HSPs)
chr6 (19-222)||(25349787-25349990)
chr6 (25-222)||(26513294-26513491)
chr6 (37-76)||(33095553-33095592)
[»] chr3 (5 HSPs)
chr3 (19-222)||(53940882-53941086)
chr3 (19-130)||(34294243-34294354)
chr3 (19-150)||(34434263-34434394)
chr3 (37-98)||(31770164-31770225)
chr3 (105-222)||(20857606-20857723)
[»] chr8 (8 HSPs)
chr8 (19-222)||(25192653-25192856)
chr8 (19-193)||(25879079-25879253)
chr8 (19-147)||(39432187-39432315)
chr8 (19-121)||(31639971-31640074)
chr8 (19-219)||(42579821-42580021)
chr8 (137-222)||(39432433-39432518)
chr8 (36-163)||(36698857-36698984)
chr8 (36-153)||(35183191-35183308)
[»] chr1 (5 HSPs)
chr1 (19-222)||(52691101-52691303)
chr1 (19-188)||(44762096-44762265)
chr1 (19-222)||(50729603-50729806)
chr1 (38-142)||(1249038-1249142)
chr1 (103-222)||(20986822-20986941)
[»] chr4 (7 HSPs)
chr4 (19-106)||(55479804-55479892)
chr4 (19-222)||(19119641-19119844)
chr4 (19-75)||(9321795-9321851)
chr4 (19-75)||(9376274-9376330)
chr4 (19-59)||(32384873-32384913)
chr4 (19-86)||(12225795-12225862)
chr4 (20-76)||(34104903-34104959)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 40109914 - 40110117
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40109914 aatatttataaaattacggtcagtcgatacccagacataacatagggtccgaccaccacatctaagtgtcatgcacaaacaaggcattattagcctgtaa 40110013  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  40110014 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatattattaaatattctattgttacgttcattccaaactacccag 40110113  T
Q  219 acac 222  Q
    ||||    
T  40110114 acac 40110117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 19469463 - 19469260
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||     
T  19469463 aatatttacaaaagtacggtcagtcgatactcagacataacataggatccgaccaccacatgtgagtgtcatgcacaaacaaggcattattagcttgtag 19469364  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  19469363 ccatcataaagaatggaatttaatcttttctaataattgatcaatggtagtttggatattattaaatattctattgttgcgttcattccaaactacccag 19469264  T
Q  219 acac 222  Q
    ||||    
T  19469263 acac 19469260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 18845209 - 18845006
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| ||| |     
T  18845209 aatatttacaaaagtacggtcagtcgatacctagacataacatagggtccgaccatcacatctgagtaccatgcacaaacaaggcattattagtctgcag 18845110  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |  ||||||| ||||||||| ||    
T  18845109 ctaccataaagaatggaatttaatcttttctaataattgatcaatggtagtttggatattattaaatattctattgatgagttcatttcaaactacctag 18845010  T
Q  219 acac 222  Q
    ||||    
T  18845009 acac 18845006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 11580116 - 11579913
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||| ||     
T  11580116 aatatttacaaaagttcagtcagtcgatacccaaacataacatagggttcgaccaccacatctgagtgtcatgcacaaacgaggcgttattagcctttag 11580017  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    |||||| |||||||| ||||||| ||||||||  | ||| || ||| | ||||||||  ||||||||||| |||  |||||||||||| |||| ||||||    
T  11580016 ccaccacaaagaatgaaatttaaccttttctagaagttgttctatggtggtttggatgttattaaatattctatcattacgttcattctaaaccacccag 11579917  T
Q  219 acac 222  Q
    ||||    
T  11579916 acac 11579913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 12562586 - 12562789
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    |||||||||| || ||  ||||||||||||||||| |||||||||| ||| |||||||||||| ||| ||||||| |||| ||||||||||| |||  |     
T  12562586 aatatttacacaactatggtcagtcgatacccagatataacataggatccaaccaccacatctcagtctcatgcaaaaaccaggcattattaaccttaag 12562685  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
     ||||| ||||||||  |||||| |||||||| |||||| || ||| | ||||||||| ||||||||||||  || ||||| || |||||||| |||||     
T  12562686 tcaccacaaagaatgatatttaaccttttctactaattgttctatggtggtttggatattattaaatatttagttattacgctctttccaaaccacccaa 12562785  T
Q  219 acac 222  Q
    ||||    
T  12562786 acac 12562789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 18634563 - 18634721
Alignment:
Q  53 acataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaaccaccataaagaatggaatttaatcttttctaat 152  Q
    |||||||| |||||||||||||||  |||||| | ||| |||||||  || ||||||||| |  |  ||||| ||  |||| |||||||  ||||||||     
T  18634563 acataacaaagggtccgaccaccatctctgagagccatacacaaacgtggtattattagctttaagtcaccaaaacaaatgaaatttaactttttctaag 18634662  T
Q  153 aattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaac 211  Q
    | ||||||  || | ||||||||  ||||||||||||| || |||||||||||||||||    
T  18634663 agttgatctgtggtggtttggatgttattaaatattttgttattacgttcattccaaac 18634721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 7300260 - 7300299
Alignment:
Q  37 gtcagtcgatacccagacataacatagggtccgaccacca 76  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  7300260 gtcagtcgatacccaaacataacaaagggtccgaccacca 7300299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 19914249 - 19914453
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19914249 aatatttacaaaattacagtcagtcgatactcagtcataacataagatccgaccaccacatctgagtgtcatgcacaaacaaggcattattaacctgtaa 19914348  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19914349 ccaccataaagaatggaatttaatcttttctaataattgatcaatggtagtttggatactattaaatattctattgttacgttcattccaaactacccag 19914448  T
Q  219 acact 223  Q
    |||||    
T  19914449 acact 19914453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 35552847 - 35552983
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35552847 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgccatgcacaaacaaggcattattagcctgtaa 35552946  T
Q  119 ccaccataaagaatggaatttaatcttttctaataat 155  Q
    |||||||||||||||||||||||||||||| ||||||    
T  35552947 ccaccataaagaatggaatttaatcttttcaaataat 35552983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 44432980 - 44433118
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||| ||||||   |||||||||||| ||| |||| ||| | |||||||||  |||| ||  |||||||||| | ||||||||||||||  |     
T  44432980 aatatttacaagattacaaatagtcgatacccaaacaaaacagaggattcgaccaccaagtctgcgtaccatgcacaaaaatggcattattagccttaag 44433079  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattg 157  Q
    ||| || || |||||| ||||||||||||||||||||||    
T  44433080 ccatcacaatgaatggtatttaatcttttctaataattg 44433118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 20348528 - 20348731
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||| ||||||  |||||||| ||||| || |||||||||| |||||||||   ||| ||  | ||||||||   ||||||||||||||  |     
T  20348528 aatatttacaagattacaagcagtcgattcccaggcaaaacatagggttcgaccaccaagcctgcgtaccgtgcacaaaatgggcattattagccttaag 20348627  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    |||||| ||||||| | |||| ||||| ||||||||| |||| ||| | || |||| | | ||||||||| | |  ||||| |||||||  || ||||||    
T  20348628 ccaccacaaagaatagtatttgatcttatctaataatcgatctatggtggtatggacatttttaaatattatgtcattacggtcattccgcaccacccag 20348727  T
Q  219 acac 222  Q
    ||||    
T  20348728 acac 20348731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 39474596 - 39474540
Alignment:
Q  20 atatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccacca 76  Q
    |||| ||||||| ||| ||||||| |||||||  ||||||| |||||||||||||||    
T  39474596 atatgtacaaaaatacggtcagtcaatacccaagcataacaaagggtccgaccacca 39474540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 41612264 - 41612467
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  41612264 aatatttacaaaattacggtcagtcgatacccagacataacatagggtccgaccaccacatttgagtgccgtgcacaaacaaggcattattagcctgtaa 41612363  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  41612364 ccaccataaagaatggaatttaatcttttctaataattgatcaatggtagtttggatattattaaatattctattgttacgttcattccaaactacccag 41612463  T
Q  219 acac 222  Q
    ||||    
T  41612464 acac 41612467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 17431076 - 17431279
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17431076 aatatttacaaaattacggtcagtcgatacccaaacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctctaa 17431175  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||| ||||    
T  17431176 ccaccataaagaatggaatttaatcttttctaataattgatcaatggtagttttgatattattaaatattctattgttacgttcattccaaactaaccag 17431275  T
Q  219 acac 222  Q
    ||||    
T  17431276 acac 17431279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 379495 - 379680
Alignment:
Q  37 gtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaaccaccataaagaatggaa 136  Q
    ||||||||||||||| |||  ||| |||||||||||||||  ||||||| || | ||||||    || || |||||||  | ||||||||| ||||| ||    
T  379495 gtcagtcgatacccaaacaatacaaagggtccgaccaccaactctgagtatcgtacacaaaattagcgttcttagccttaagccaccataacgaatgaaa 379594  T
Q  137 tttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccagacac 222  Q
    |||||  || ||||| | ||| || | | | |||||| || ||||||||||| ||||||||||  ||||||| || | ||||||||    
T  379595 tttaactttctctaaaagttggtctacggtggtttgggtattattaaatattctattgttacgagcattccagaccatccagacac 379680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 4421391 - 4421486
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcct 114  Q
    |||||||||||   || |||||||||||||||| ||||||||  || | ||||||||||||||| ||  |||||| |||   ||||||||||||||    
T  4421391 aatatttacaagtctatagtcagtcgatacccaaacataacaagggattcgaccaccacatctgcgtaccatgcataaaattggcattattagcct 4421486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 25349787 - 25349990
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  25349787 aatatttacaaaattatggtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgccatgcacaaacaaggcattattagcatgtaa 25349886  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  25349887 ccaccataaagaatgtaatttaatcttttctaataattgatcaatggtagtttggatattattaaatattctattgttacgtttattccaaactacccag 25349986  T
Q  219 acac 222  Q
    ||||    
T  25349987 acac 25349990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 26513294 - 26513491
Alignment:
Q  25 tacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaaccacca 124  Q
    ||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||| ||| | |||| |||| ||||||||||||||| |||||||||    
T  26513294 tacaaaagtacggtcagtcgatacccagaaataacattgggtccgaccaccacatctgtgtgccgtgcataaacgaggcattattagcctttaaccacca 26513393  T
Q  125 taaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccagacac 222  Q
     |||||||| ||||| |||||||||||||||||  | ||| | |||||| || ||||||| ||| | ||||| || ||||||||||| ||||||||||    
T  26513394 caaagaatgaaattttatcttttctaataattgtgctatggtggtttggttattattaaaaattatgttgttgcggtcattccaaaccacccagacac 26513491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 33095553 - 33095592
Alignment:
Q  37 gtcagtcgatacccagacataacatagggtccgaccacca 76  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  33095553 gtcagtcgatacctagacataacaaagggtccgaccacca 33095592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 53940882 - 53941086
Alignment:
Q  19 aatatttacaaaa-ttacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgta 117  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  53940882 aatatttacaaaaattacggtcagtcgatacccagacataacatagggtccgaccaccacaactgagtgccatgcacaaacaaggcattattagcctgta 53940981  T
Q  118 accaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactaccca 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  53940982 accaccataaagaatggaatttaatcttttctaataattaatcaatggtagtttggatattattaaatattctattgttacgttcattccaaactaccca 53941081  T
Q  218 gacac 222  Q
     ||||    
T  53941082 tacac 53941086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 34294354 - 34294243
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    |||||||||| || | ||||||||||||||||| |||||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |||    
T  34294354 aatatttacacaagttcagtcagtcgatacccaaacataagatagggttcgaccaccatatctgagtgccatgcacaaacaaggcattattagcctttaa 34294255  T
Q  119 ccaccataaaga 130  Q
    |||||| |||||    
T  34294254 ccaccacaaaga 34294243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 34434394 - 34434263
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||  | ||||||||||||  |     
T  34434394 aatatttacaaaactacagtcagtcgatacccaaacataacaaagggttcgaccaccacatctgagtgtcgtgcacaaacttgacattattagccttaag 34434295  T
Q  119 ccaccataaagaatggaatttaatcttttcta 150  Q
    |||||| || |||||  |||||| ||||||||    
T  34434294 ccaccacaacgaatgatatttaaccttttcta 34434263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 31770225 - 31770164
Alignment:
Q  37 gtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaac 98  Q
    ||||||||| ||||| ||| ||||||||||||||||||||  |||||||||||| |||||||    
T  31770225 gtcagtcgaaacccaaacacaacatagggtccgaccaccatctctgagtgtcatacacaaac 31770164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 20857606 - 20857723
Alignment:
Q  105 ttattagcctgtaaccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcat 204  Q
    ||||||||||  | |||||| ||||| ||| ||||||  ||||||| || ||| || ||| | ||||||||| ||||| | | | |||| ||||||||||    
T  20857606 ttattagccttgagccaccacaaagagtggtatttaactttttctactagttgttccatggttgtttggatattattataaagtctattattacgttcat 20857705  T
Q  205 tccaaactacccagacac 222  Q
    ||||||| | ||||||||    
T  20857706 tccaaaccaaccagacac 20857723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 25192653 - 25192856
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||     
T  25192653 aatatttacaaaagtacggtcagtcgatacccagacataacatagggtacgaccaccacatctgagtgccatgcacaaacaaggcattattagcttgtag 25192752  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  25192753 ccaccataaataatggaatttaatcttgtctaataattgatcaatggtagtttggatattattaaatattctattgttgcgttcattccaaactacccag 25192852  T
Q  219 acac 222  Q
    ||||    
T  25192853 acac 25192856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 25879079 - 25879253
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||  |||||||||| ||| ||||||||||||||||    
T  25879079 aatatttacaaaattacggttagtcgatacccatacataacatagggtccgaccaccacatctgagtaccatgcacaaagaagacattattagcctgtaa 25879178  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttatt 193  Q
    |||||||||||||| ||||||||||||||||||||||||||||||  ||||||| ||| ||||||||||| ||||    
T  25879179 ccaccataaagaattgaatttaatcttttctaataattgatcaatagtagtttgaatattattaaatattctatt 25879253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 39432187 - 39432315
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||| ||||     
T  39432187 aatatttacaaaagtatggtcagtcgatacccagacataacatagggtctgacgaccacatctgagtatcatgcacaaacaagacattattagcttgtag 39432286  T
Q  119 ccaccataaagaatggaatttaatctttt 147  Q
    ||||||||||||||||| |||||||||||    
T  39432287 ccaccataaagaatggagtttaatctttt 39432315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 31640074 - 31639971
Alignment:
Q  19 aatatttacaaaa-ttacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgta 117  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  31640074 aatatttacaaaaattacggtcagtcgatacccagacataacatagggtccgaccaccacaactgagtgtcatgcacaaacaaggcattattaacctgta 31639975  T
Q  118 acca 121  Q
    ||||    
T  31639974 acca 31639971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 42580021 - 42579821
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    |||||||| |||| |||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||     
T  42580021 aatatttataaaagtacagtcaatcgatatccaaacataacatagggttcgaccaccacatctgagtgtcatgcacaaacgaggcattattagcctttag 42579922  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    |||||| || ||||  ||||||| ||||| ||  | ||| || ||| | ||||||||  ||||||||||| |||  |||||  |||||||||| ||||||    
T  42579921 ccaccacaaggaatcaaatttaaccttttttagaagttgttctatggtggtttggatgttattaaatattctatcattacgagcattccaaaccacccag 42579822  T
Q  219 a 219  Q
    |    
T  42579821 a 42579821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 39432433 - 39432518
Alignment:
Q  137 tttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccagacac 222  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||| | ||||| |||||||| ||||| ||||||||||    
T  39432433 tttaatcttttctaataattgatcaatggtattttggatattattaaatattatgttgttgcgttcatttcaaaccacccagacac 39432518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 36698984 - 36698857
Alignment:
Q  36 agtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaaccaccataaagaatgga 135  Q
    |||||||||||||||| |||    | |||||||||| ||||  | |||| ||||| ||||||||  | ||||| ||||| || |||||||||||||||      
T  36698984 agtcagtcgatacccaaacactgtaaagggtccgactaccaattatgagagtcatacacaaacatagtattatgagcctttagccaccataaagaatgat 36698885  T
Q  136 atttaatcttttctaataattgatcaat 163  Q
    ||||  ||||||||||||| | ||||||    
T  36698884 attttgtcttttctaataagttatcaat 36698857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 153
Target Start/End: Complemental strand, 35183308 - 35183191
Alignment:
Q  36 agtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaaccaccataaagaatgga 135  Q
    |||||||||||||||| |||    | |||||||||||||||  | ||||  |||| ||||||||  | ||||| ||||| || |||||||||||||||      
T  35183308 agtcagtcgatacccaaacactgtaaagggtccgaccaccaattatgagaatcatacacaaacatagtattatgagcctttagccaccataaagaatgat 35183209  T
Q  136 atttaatcttttctaata 153  Q
    |||| | |||||||||||    
T  35183208 attttaccttttctaata 35183191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 52691101 - 52691303
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |    
T  52691101 aatatttacaaaattacggtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaagacattattagcttgt-a 52691199  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    ||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  52691200 ccaccgtaaagaatgaaatttaatcttttataataattgatcaatggtagtttgaatattattaaatattctattgttacgttcattccaaactacccag 52691299  T
Q  219 acac 222  Q
    ||||    
T  52691300 acac 52691303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 44762096 - 44762265
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    |||||||||| || | ||||||||||||||||| |||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||||||||| |||    
T  44762096 aatatttacacaagttcagtcagtcgatacccaaacataacatagggttcgaccagcacatctgagtgccatgcacaaacaatgcattattagcctttaa 44762195  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatatt 188  Q
    |||||| ||||  || |||| || ||||||||  ||||| |  ||| |||||| |||  |||||||||||    
T  44762196 ccaccacaaagcgtgaaattaaaccttttctataaattgttatatggtagtttagatgttattaaatatt 44762265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 50729603 - 50729806
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||||| | |||| ||||||||||||||||||||||| ||||| | |||||||| |||  ||  | |||||||| | |||||||| |||||  |     
T  50729603 aatatttacaagactacattcagtcgatacccagacataacaaagggttcaaccaccacgtctacgtaccgtgcacaaaaatggcattatcagccttaag 50729702  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    |||||| || |||||| ||||||  |||||||||||||| || ||| | || |||| | ||||||||||| |||  |||||  ||||| | || ||||||    
T  50729703 ccaccacaacgaatggtatttaactttttctaataattgttctatggtggtatggacattattaaatattctatcattacgggcattctacaccacccag 50729802  T
Q  219 acac 222  Q
    ||||    
T  50729803 acac 50729806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 1249142 - 1249038
Alignment:
Q  38 tcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaaccaccataaagaatggaat 137  Q
    |||||||||||||| |||||||| |||||||| ||||||| | |||| | | | ||||||   | ||||| |||| | || ||||||||||||||| |||    
T  1249142 tcagtcgatacccaaacataacagagggtccggccaccacctttgagagccgtacacaaatgtgccattactagcttttagccaccataaagaatgtaat 1249043  T
Q  138 ttaat 142  Q
    |||||    
T  1249042 ttaat 1249038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 20986822 - 20986941
Alignment:
Q  103 cattattagcctgtaaccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttc 202  Q
    ||||||||||||  | |||||| ||||||| | |||||||||| ||||||||| |||| ||| | || |||| | ||||||||||| | |  ||||| ||    
T  20986822 cattattagccttaagccaccacaaagaatagtatttaatcttatctaataatcgatctatggtggtatggacattattaaatattatgtcattacggtc 20986921  T
Q  203 attccaaactacccagacac 222  Q
    ||| || || ||||||||||    
T  20986922 attgcacaccacccagacac 20986941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 55479804 - 55479892
Alignment:
Q  19 aatatttacaaaa-ttacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcatt 106  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  55479804 aatatttacaaaaattacggtcagtcgatacccagacataacatagggtccgaccaccacaactgagtgtcatgcacaaacaaggcatt 55479892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 19119641 - 19119844
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtgtcatgcacaaacaaggcattattagcctgtaa 118  Q
    ||||||||| |||  || |||||||||||||||||||||||| | |||| ||||||||  ||| |||||| |||||||||  | |||||||||| |  |     
T  19119641 aatatttactaaacaacggtcagtcgatacccagacataacaaaaggtctgaccaccaactctaagtgtcgtgcacaaacttgacattattagctttaag 19119740  T
Q  119 ccaccataaagaatggaatttaatcttttctaataattgatcaatgatagtttggatactattaaatattttattgttacgttcattccaaactacccag 218  Q
    ||||||||| ||||| |||||||  |||| ||| | ||| || ||| | | ||||||| ||||||||||||| || ||||||||||||||||| | ||||    
T  19119741 ccaccataacgaatgaaatttaactttttataagagttgttctatggtggcttggatattattaaatattttgttattacgttcattccaaaccatccag 19119840  T
Q  219 acac 222  Q
    ||||    
T  19119841 acac 19119844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 9321851 - 9321795
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccacc 75  Q
    ||||||||||||| ||| |||||||||||| || |||||||||||||||||||||||    
T  9321851 aatatttacaaaagtacggtcagtcgatactcaaacataacatagggtccgaccacc 9321795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 9376330 - 9376274
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccacc 75  Q
    ||||||||||||| ||| |||||||||||| || |||||||||||||||||||||||    
T  9376330 aatatttacaaaagtacggtcagtcgatactcaaacataacatagggtccgaccacc 9376274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 32384913 - 32384873
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataac 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32384913 aatatttacaaaattacagtcagtcgatacccagacataac 32384873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 12225862 - 12225795
Alignment:
Q  19 aatatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccaccacatctgagtg 86  Q
    |||||||||||||| |  ||||||||||||||||| | || |||||||||||||||||||||| ||||    
T  12225862 aatatttacaaaataaaggtcagtcgatacccagataaaatatagggtccgaccaccacatctaagtg 12225795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 34104903 - 34104959
Alignment:
Q  20 atatttacaaaattacagtcagtcgatacccagacataacatagggtccgaccacca 76  Q
    |||| ||||||| ||| ||||||||||||||| |||||||| |||||||||||||||    
T  34104903 atatgtacaaaaatacggtcagtcgatacccaaacataacaaagggtccgaccacca 34104959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University