View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_53 (Length: 242)
Name: NF7966_low_53
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 5562953 - 5562739
Alignment:
| Q |
9 |
gtctatgtatcactactcatcataaaaatatacaatgctatccctcgcagcagcatacccaacctagtgcaatattttacatgacacccagcaaaacaat |
108 |
Q |
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| T |
5562953 |
gtctatgtatcactactcatcataaaaatatacaatgctatccctcgaagcagcatacccaacctagtgcaatattttacatgacagccagcaaaacaat |
5562854 |
T |
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| Q |
109 |
attacaatactcacatattccagccagaaattattgaaaaaatgtcacaacaaacataaggtcggtcaaaatatgaaacctaaccctccactatctaaaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5562853 |
attacaatactcacatattccagccagaaattattgaaaaaatgtcacaacaagcataaggtcggtcaaaatatgaaacctaaccctccactatctaaaa |
5562754 |
T |
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| Q |
209 |
caaaagagcacatga |
223 |
Q |
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||||||||||||||| |
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| T |
5562753 |
caaaagagcacatga |
5562739 |
T |
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