View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_8 (Length: 527)
Name: NF7966_low_8
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_8 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 66 - 527
Target Start/End: Complemental strand, 10281425 - 10280965
Alignment:
| Q |
66 |
accaacttctacatattccattagcagaacaaggaagcagttgaggaggcggaggcatgggcgggacatggcacaatgctttatttttgttttgacttgt |
165 |
Q |
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| T |
10281425 |
accagcttctacatattccgttagcagaacaaggaagcagttgaggaagcagaagcatgggcgggacatggcacaatgctttatttttgttttgacttgt |
10281326 |
T |
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| Q |
166 |
acattcatgtaattcgtagtattaattacttgatcgtttttagtcttggtttgaaaagggatgtaaattaatgacttgatcatttcttgtgctaatgaat |
265 |
Q |
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| T |
10281325 |
acgttcatgtaattcgtaggattaattacttgatcgtttttagttttggttttaaaggggatgtaaattaatgacttgatcatttcttgtgttaatgaat |
10281226 |
T |
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| Q |
266 |
gatttgaatgtattatatttatttcataaatgatatgaatgactttggttagaatggatgtatgatgattttatgaatgattgaatcaaagtatgaatga |
365 |
Q |
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| T |
10281225 |
gatttgaatgtattatatttatttcataaatgatatgaatgactttggttagaatggatgtatgatgattttatgaatgattgaatcaaagtatgaatga |
10281126 |
T |
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| Q |
366 |
aggaaagtatatatgtaaaaataaaacaacaattctatcaagaaagttgtatgtttttgttaacaggaaaccacgatagttaactgccgttggtgtcagc |
465 |
Q |
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| T |
10281125 |
aggaaagtttatatgt-aaaataaaacaacaattctatcaagaaagttgtatgtttttgttatcaggaaaccacaatagttaactgtcgttggtgtcagc |
10281027 |
T |
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| Q |
466 |
tgctattaacaatcgttggttagatcggtagttatctgttgttggcactagcagcagttaac |
527 |
Q |
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| T |
10281026 |
tgctattaactatcgttggttagatcggtagttaactgttgttggcactagcagcagttaac |
10280965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10281623 - 10281555
Alignment:
| Q |
1 |
cttggtatagttctatcgggggagatcctcttaggccagctaatgagaacaaatcattgagcatgacca |
69 |
Q |
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| T |
10281623 |
cttggtatagttctatcaggggagatcctcttaggccagctaatgagaacaaatcattgagcatgacca |
10281555 |
T |
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