View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7966_low_9 (Length: 525)
Name: NF7966_low_9
Description: NF7966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7966_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 20 - 507
Target Start/End: Original strand, 26618779 - 26619265
Alignment:
| Q |
20 |
taaggatttatgcactcaaaaaatccaaagtcacacacatctcaactgaaaaacagttgcaactaactaactgtacaaatgtaatttcaaaaataactac |
119 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26618779 |
taagtatttatgcactcaacaaatccaaagtcacacacatctcaactgaaaaacagttgcaactaactaactgtacaaatgtaatttcaaaaataactac |
26618878 |
T |
|
| Q |
120 |
agttgcttgctcaacaagccatccatccttactaacatgaattattcaaatcataatacaccaccttaattcatgttagctaatgattcaaattgttata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26618879 |
agttgcttgctcaacaagccatccatccttactaacatgaattattcaaatcataatacaccaccttaattcatgttagctaatgattcaaattgttata |
26618978 |
T |
|
| Q |
220 |
ccattttaaatgtgacactatttgtcctttctttcctttgcaaaacaaattgaacaatagaaaattatctactatctcagaattccgtcaaactgagaat |
319 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26618979 |
ccattttaaatgtgacactatttgtcttttctttcctttgcaaaacaaattgaacaatagaaaattatctactatctcataattccgtcaaactgagaat |
26619078 |
T |
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| Q |
320 |
ttgatcccaaatcatttgagttttcacacagtttattaaaaaattacttactggtttattgccaacaaggcaaaatattttgaacaaaggaaagagaaag |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
26619079 |
ttgatcccaaatcatttgagttttcacacagtttattaaaaaattacttactggtttattgccatcaaggcaaaatattttgaacaaaggaaatagaaag |
26619178 |
T |
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| Q |
420 |
taaaattgacttttattactgaattatgagagcacaaggagcttatatacgcatattgaactctatgatagcttattgcaagtaacct |
507 |
Q |
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| T |
26619179 |
taaaattgacttttattactgaattatgaga-cacaaggagcttatatacgcatattgaactctatgatagcttattgcaagtaacct |
26619265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 507
Target Start/End: Complemental strand, 52548761 - 52548649
Alignment:
| Q |
395 |
tattttgaacaaaggaaagagaaagtaaaattgactttt-attactgaattatgagagcacaaggagcttatatacgcatattgaactctatgatagctt |
493 |
Q |
| |
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|||| |||||||||||||||||||| ||| |||| || | |||||||||||| |||| | ||| |||||||||||||||||| ||||||| |||||| |
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| T |
52548761 |
tattatgaacaaaggaaagagaaaggaaa-ttgatttctcattactgaattagaagagtataagatacttatatacgcatattgagctctatgttagctt |
52548663 |
T |
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| Q |
494 |
attgcaagtaacct |
507 |
Q |
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|||| | ||||||| |
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| T |
52548662 |
attgtatgtaacct |
52548649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 4028473 - 4028424
Alignment:
| Q |
248 |
ttctttcctttgcaaaacaaattgaacaatagaaaattatctactatctc |
297 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
4028473 |
ttctttcctttgcaaagaaaattgaacaatagaaaggtatctactatctc |
4028424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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