View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7967_low_1 (Length: 545)
Name: NF7967_low_1
Description: NF7967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7967_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 130 - 533
Target Start/End: Original strand, 34420175 - 34420578
Alignment:
| Q |
130 |
aattgttcttctcttggtcaagtatttactatgaaattgttgttcaggaaactgaggggatgattgctgatgttcttggagttgaagttttcaggcagac |
229 |
Q |
| |
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||||||||| | |||||| |||||||| | |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
34420175 |
aattgttctaatgttggtctagtatttattgtgaaattgttgttcaggaaactgaggagctgattgctgatgttcttggagttgaagttttcaggcagac |
34420274 |
T |
|
| Q |
230 |
agttggtggtaacgttctttctggcagttactgtgctctgtccaacagaggtggtttggtaggtgcaagacatgtccttttgaatgtttcaacttgaata |
329 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34420275 |
agttggtggtaatattctttctggcagttactgtgctctgtccaacagaggtggtttggtaggtgcaagacatgtccttttgaatgtttcaacttgaata |
34420374 |
T |
|
| Q |
330 |
aatgttctatcttttgatcatatacactgaatgcaggtccaccctcatacttctgttgaagacttggatgaactctctacacttcttcaaattccgttgg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34420375 |
aatgttctatcttttgatcatatacactgaatgcaggtccaccctcatacttctgttgaagacttggatgaactctctacacttcttcaaattccgttgg |
34420474 |
T |
|
| Q |
430 |
ttgcagggactgtcaatcgcggtagtgaagtaatagcatctggcatggtagtaaatgattggacggcattttgtggctcagacactacagcaacagagct |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34420475 |
ttgcagggactgtcaatcgcggtagtgaagtaatagcatctggcatggtagtaaatgattggacggcattttgtggctcagacactacagcaacagagct |
34420574 |
T |
|
| Q |
530 |
ctct |
533 |
Q |
| |
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|||| |
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| T |
34420575 |
ctct |
34420578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 34424183 - 34424715
Alignment:
| Q |
1 |
tgtgctaatctcttaaacttagttagggttgagaattggtttagagataaactcgtattttcatgttaaacaatgctgaataaagaagtggcctaacagg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34424183 |
tgtgctaatctcttaaacttagttagggttgagaattggtttagagataaactcgtattttcatgttaaacaatgctgaataaagaagtggtctaacagt |
34424282 |
T |
|
| Q |
101 |
cacatatccattatcttctggnnnnnnnnaattgttcttctcttggtcaagtatttactatgaaattgttgttcaggaaactgaggggatgattgctgat |
200 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| ||| |
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| T |
34424283 |
cacatatccattatcttctggttttttt-aattgttcttctcttggtcaagtatttactatgaaattgttgttcaggaaactgaggaggtggttgcagat |
34424381 |
T |
|
| Q |
201 |
gttcttggagttgaagttttcaggcagacagttggtggtaacgttctttctggcagttactgtgctctgtccaacagaggtggtttggtaggtgcaagac |
300 |
Q |
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||||||||||| ||||| || ||||||||||||| |||||| ||||| || |||||||||||| | || |||| ||||||||||||| ||||||||| |
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| T |
34424382 |
gttcttggagtagaagtatttaggcagacagttgctggtaatattcttgtgggaagttactgtgctttttcgaacaaaggtggtttggtaagtgcaagac |
34424481 |
T |
|
| Q |
301 |
at--gtccttttgaatgtttcaacttgaataaatgttctat--cttttgatcatatacactgaatgcaggtccaccctcatacttctgttgaagacttgg |
396 |
Q |
| |
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|| ||||| ||||||||||||| || ||||||| || ||| ||||||| || || |||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
34424482 |
atatgtcctcttgaatgtttcaattttaataaatcttttatatcttttgacca-at-cactgaatccaggttcaccctcatacttccattgaagacttgg |
34424579 |
T |
|
| Q |
397 |
atgaactctctacacttcttcaaattccgttggttgcagggactgtcaatcgcggtagtgaagtaatagcatctggcatggtagtaaatgattggacggc |
496 |
Q |
| |
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||||||| ||||||||||||||| |||| |||||||| || ||||| || || ||||| |||||||||||| |||||||| ||||||||||||||| || |
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| T |
34424580 |
atgaactatctacacttcttcaagttcctttggttgccggaactgtgaaccgtggtagcgaagtaatagcagctggcatgacagtaaatgattggacagc |
34424679 |
T |
|
| Q |
497 |
attttgtggctcagacactacagcaacagagctctc |
532 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||| |
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| T |
34424680 |
attttgtggttcagacactacagcaacagaactctc |
34424715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 360 - 533
Target Start/End: Original strand, 24347614 - 24347787
Alignment:
| Q |
360 |
atgcaggtccaccctcatacttctgttgaagacttggatgaactctctacacttcttcaaattccgttggttgcagggactgtcaatcgcggtagtgaag |
459 |
Q |
| |
|
||||||||||||||||| || ||| | ||||| ||||||||||| ||||||||||||||| |||| ||||| || || || || || | |||||||||| |
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| T |
24347614 |
atgcaggtccaccctcacacatctatagaagatttggatgaactttctacacttcttcaagttcctttggtggccggaacagtgaacagaggtagtgaag |
24347713 |
T |
|
| Q |
460 |
taatagcatctggcatggtagtaaatgattggacggcattttgtggctcagacactacagcaacagagctctct |
533 |
Q |
| |
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| ||||| |||| ||| |||| || || ||||| |||||||||| |||||||| ||||||||||| |||||| |
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| T |
24347714 |
tgatagctgctggaatgatagttaacgactggacatcattttgtggttcagacaccacagcaacagaactctct |
24347787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 24347415 - 24347535
Alignment:
| Q |
169 |
ttgttcaggaaactgaggggatgattgctgatgttcttggagttgaagttttcaggcagacagttggtggtaacgttctttctggcagttactgtgctct |
268 |
Q |
| |
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|||||||||||||||||| ||| ||||| |||||||| ||||| ||||||||||||||||| ||| ||| || ||||| ||| |||| |||||||| |
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| T |
24347415 |
ttgttcaggaaactgaggagataattgcagatgttctcggagtagaagttttcaggcagaccattgctggcaatattcttgttggtagtttttgtgctct |
24347514 |
T |
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| Q |
269 |
gtccaacagaggtggtttggt |
289 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
24347515 |
ctccaacagaggtggtttggt |
24347535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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