View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7967_low_3 (Length: 246)
Name: NF7967_low_3
Description: NF7967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7967_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 37165739 - 37165509
Alignment:
| Q |
1 |
aacagagaattaaataaaagatattttttagcttgaaaataatctgaaacgtaacaccatatgtaagctattcttatgtcttcataaaacatcttatgta |
100 |
Q |
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| T |
37165739 |
aacagagaattaaataaaagatattttttagcttgaaaataatatgaaaggtaacaccatatgtaagctattcttatgtcttcataaaacatcttatgta |
37165640 |
T |
|
| Q |
101 |
agcttaacttatttaacaaaaaagctataaacaaattgatatcttgatgatattggggggctaatattagttgattacaaaaatgtttaataaaagcact |
200 |
Q |
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| T |
37165639 |
agcttaacttatttaacaaaaaagctataaacaaattgatatctcgatgatattggggggctaatactagttgattacaaaaatgtttaataaaagcact |
37165540 |
T |
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| Q |
201 |
tttcaagcataactacttaaaccatgtaaat |
231 |
Q |
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| T |
37165539 |
tttcaagcataactacttaaaccatgtaaat |
37165509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 37140376 - 37140328
Alignment:
| Q |
34 |
tgaaaataatctgaaacgtaacaccatatgtaagctattcttatgtctt |
82 |
Q |
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| T |
37140376 |
tgaaaataatttgaaacgtaacaccatatatcagctattcacatgtctt |
37140328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 29723111 - 29723205
Alignment:
| Q |
1 |
aacagagaattaaataaaagatattttttagcttgaaaataatctg-aaacgtaacaccatatgtaagctattc--ttatgtcttcataaaacat |
92 |
Q |
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| T |
29723111 |
aacaaagaattaaatgaaagatatgtttgagcttgaaaataatatgaaaaggtaacaccatatataagttattcatatatgtcttcataaaacat |
29723205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 29723368 - 29723420
Alignment:
| Q |
102 |
gcttaacttatttaacaaaaaagctataaacaaattgatatcttgatgatatt |
154 |
Q |
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||||||| ||||||||| |||||||||||||||||||| ||| |||||||||| |
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| T |
29723368 |
gcttaacatatttaacataaaagctataaacaaattgagatcatgatgatatt |
29723420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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