View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7968_high_3 (Length: 336)
Name: NF7968_high_3
Description: NF7968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7968_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 15545021 - 15545327
Alignment:
| Q |
1 |
ggatagggtggatttggggtcccaacctgtttgagttatcaatattcccgttgatgcctacatttgctctctttattcaagaaaaagaagggnnnnnnnn |
100 |
Q |
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| T |
15545021 |
ggatagggtggatttggggtcccaacctgtttgagttatcaatattccatttgatgcctacatttgctctctttattcaggaaaaagaag-------aaa |
15545113 |
T |
|
| Q |
101 |
nnnnngtaaaagcatatttgaaatattaattgttattttcagatcaaaatattgattgtgcatgtaactttactnnnnnnnnnnnttgtgtatgtaactt |
200 |
Q |
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|||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
15545114 |
aaaaagtaaaagcgtatttgaaatatt---tgttattttcatatcaaaatattgattgtgcatgtaactttactaaaaaaaaa--tagtgtatgtaactt |
15545208 |
T |
|
| Q |
201 |
gatatatgtttacccnnnnnnnnaacggttgatatatatgtgtctctctatctctaactttttatcttctacttttctggtacagttcatcttctacaat |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15545209 |
gatatatgtttacccttttttttaacggttgatatatatgtgtctctctatctctaactttttatcttctacttttctggtacagttcatcttctacaat |
15545308 |
T |
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| Q |
301 |
ttacacatgtttccaaaat |
319 |
Q |
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||||||||||||||||||| |
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| T |
15545309 |
ttacacatgtttccaaaat |
15545327 |
T |
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