View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7968_low_1 (Length: 797)
Name: NF7968_low_1
Description: NF7968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7968_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 457
Target Start/End: Original strand, 36479467 - 36479905
Alignment:
| Q |
20 |
gaaagatcaagtatagataggttgaaactgagtaatcgagcaaactttcgtatggtagctcatatgaaaaattaagcgtttaaaacaaatgtaacaatnn |
119 |
Q |
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| T |
36479467 |
gaaagatcaagtatagataggttgaaactgagtaatcgagcaaactttcgtatggtagctcatatgaaaaattaagcgtttaaaacaaatgtagcaataa |
36479566 |
T |
|
| Q |
120 |
nnnnnn---ttgatttgaagtcatcaaagagannnnnnnngacacatggtcatcaaagagatagatctatcgagcaatgatatatagtgtcacatgaaca |
216 |
Q |
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| T |
36479567 |
aaaaaaaaattgacttgaagtcatcaaagagattttttttgacacatagtcatcaaagagatagatctatcgagcaatgatatatagtgtcacatgaaca |
36479666 |
T |
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| Q |
217 |
tgnnnnnnncacttcaaattttaacttgtatatatttattttgattctttacaaaattgtttatatctccgatatgaaatgtgtagatcccttggacggt |
316 |
Q |
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| T |
36479667 |
tgttttttaaacttcacattctaacttgcatatatttattttgattccttacaaaatggtttatatctccgatatgcaatgtgtagatcccttggacggt |
36479766 |
T |
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| Q |
317 |
tgcaggagcagaacaatgtttcaagtctatttataataacaaaacaacccaaacaaaaattataagnnnnnnnnntgatatattcataggggtcttaagc |
416 |
Q |
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| T |
36479767 |
tgcaggagcagaacaatgtttcaagtctatttataataacaaaacaacccaaacaaaaattataagaaaaaaaatt-atatattcataggggtcgtaggc |
36479865 |
T |
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| Q |
417 |
gtatttgaatctaggtttgcatatgatacattaagcttaaa |
457 |
Q |
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| T |
36479866 |
gtatttgaatctaggtttgcatat-atacattaggcttaaa |
36479905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 593 - 781
Target Start/End: Original strand, 36480033 - 36480221
Alignment:
| Q |
593 |
tagagaaagttgaaaactataaatccacgtggcttccggtttgtcaattgtattgtagcaatctaatctcctctaaaggagtgcgtcaaatccnnnnnnn |
692 |
Q |
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| T |
36480033 |
tagagaaagttgaaaactataaatccacgtggcttccggtttgtcaattgtattgtagcaatctaatctcctctaaaggagtgcgtcaaatccttttttt |
36480132 |
T |
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| Q |
693 |
aaaaggacgtctcaataaaatcttcttctaacatttatgttcttgttttcgttttcaacattccttttcagtattctgaacaaacaaca |
781 |
Q |
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| T |
36480133 |
aaaaggacgtctcaataaaatctccttctaatatttatgttcttgttttcgatttcaacaatctttttcactattccgaacaaacaaca |
36480221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 754
Target Start/End: Complemental strand, 45054426 - 45054381
Alignment:
| Q |
709 |
aaaatcttcttctaacatttatgttcttgttttcgttttcaacatt |
754 |
Q |
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|||||||||| | |||| ||||||||||||||| |||||||||||| |
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| T |
45054426 |
aaaatcttctacaaacacttatgttcttgtttttgttttcaacatt |
45054381 |
T |
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