View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7968_low_5 (Length: 324)
Name: NF7968_low_5
Description: NF7968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7968_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 24 - 309
Target Start/End: Complemental strand, 1390131 - 1389845
Alignment:
| Q |
24 |
gctgtattagaataactctataatgtagattgcattgtatatggcataggctccctttttacttcaatttgcccttctttttctcttacttgatagttca |
123 |
Q |
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| T |
1390131 |
gctgtattagaataactatataatgtagattgcattgtatatggcataggctccctttttacttcaatttgcccttctttttctcttacttgatagttca |
1390032 |
T |
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| Q |
124 |
tcttttccagt----attgttgaggcaattcttaccacattgatatgcaacttttttggattttatatatgacgtttagctttcactctttatgacactt |
219 |
Q |
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| T |
1390031 |
tcttttccagtattaattgttgaggcaattcttaccacattgatatgcaactttgttggattttatatatgacgtttagctttcactctttatgacactt |
1389932 |
T |
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| Q |
220 |
tcgttctcccatgattagattcttcctgacttactacaaattgttctttgtttttctaggaattagggagattatttcttcacggtattg |
309 |
Q |
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| T |
1389931 |
tcattctgcc---attagattcttcctgacttactacaaattcttcttggtttttctaggaattagggagattatttcttcacggtattg |
1389845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 4747740 - 4747667
Alignment:
| Q |
24 |
gctgtattagaataactctataatgtagattgcattgtatatggcataggctccctttttacttcaatttgccc |
97 |
Q |
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| T |
4747740 |
gctgtattagaacaactacataatgtagattgcattgtgtatggcatgggctccctttttacttcaatctgccc |
4747667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 4747500 - 4747387
Alignment:
| Q |
112 |
cttgatagttcatcttttccagtattgttgaggcaattcttaccacattgatatgcaacttttttggattttatatatgacgtttagctttcactcttta |
211 |
Q |
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| T |
4747500 |
cttgatagttcaactttcccagtattttttaggcaacttttactagattaatacgtaactttgttggatt------acgacgtctagctttcactcttta |
4747407 |
T |
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| Q |
212 |
tgacactttcgttctcccat |
231 |
Q |
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| T |
4747406 |
tgacacttttgttctcccat |
4747387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 4709686 - 4709644
Alignment:
| Q |
49 |
tagattgcattgtatatggcataggctccctttttacttcaat |
91 |
Q |
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| T |
4709686 |
tagattgcattgtgtatggcatgggctccctttttacttcaat |
4709644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 4709458 - 4709417
Alignment:
| Q |
190 |
gacgtttagctttcactctttatgacactttcgttctcccat |
231 |
Q |
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| T |
4709458 |
gacgtctagctttcactctttatgacacttttgatctcccat |
4709417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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