View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7968_low_7 (Length: 294)
Name: NF7968_low_7
Description: NF7968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7968_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 48877103 - 48877361
Alignment:
| Q |
18 |
acaacctgcatgaccaagcagagaagtttggctacactatttgaagcttattcaaaccagttcagtccttatttcttctacctcagaaaaattcggacaa |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48877103 |
acaacctgtatgaccaagcagagaagtttggctccactatttgaagcttattcaaaccagttcagtccttatttcttctacctcagaaaaattcggacaa |
48877202 |
T |
|
| Q |
118 |
ttcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctagtgcaactcagggttttcgaattcaatgtaacaagtagact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48877203 |
ttcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctagtgcaactcagggttttcgaattcaatgtaacaagtagact |
48877302 |
T |
|
| Q |
218 |
atcatagtgtgtttgcggttggcagaaataccggaactggaactgtctttatgcaatac |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48877303 |
atcatagtgtgtttgcggttggcagaaataccggaactggaattgtctttatgcaatac |
48877361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 8380756 - 8380634
Alignment:
| Q |
91 |
tcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaactcaggg |
189 |
Q |
| |
|
||||||||||| | ||||||||||| ||||| |||||||||| |||||| ||||| | |||||||||||||||||||| | | || |||| | ||||| |
|
|
| T |
8380756 |
tcttctacctcgggaaaattcggaccattcagttggagtataccgatgcaaaagagtctctcctgcaggctgctcgtaaagcaccagttgcagcacaggg |
8380657 |
T |
|
| Q |
190 |
ttttcgaattcaatgtaacaagt |
212 |
Q |
| |
|
||||| ||||| |||||||||| |
|
|
| T |
8380656 |
gtttcggattcagtgtaacaagt |
8380634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 249
Target Start/End: Complemental strand, 53456132 - 53455968
Alignment:
| Q |
86 |
ttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaact |
184 |
Q |
| |
|
|||| ||||||||||| | ||||| ||||| |||||| |||||||||| |||||| ||||| | ||||||| |||||||||||| ||| || |||| || |
|
|
| T |
53456132 |
ttatctcttctacctcgggaaaatccggactattcaattggagtatacagatgcaaaagagtctctcctgcaagctgctcgtaaagctccagttgcagct |
53456033 |
T |
|
| Q |
185 |
cagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaatacc |
249 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||||||||||| |||| | ||||| ||| ||||| |
|
|
| T |
53456032 |
cggggttttcgaattcaatgtaacaagtgggctatcatagtgcgtttactgttgggagagatacc |
53455968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University