View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7968_low_9 (Length: 220)
Name: NF7968_low_9
Description: NF7968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7968_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 17870423 - 17870231
Alignment:
| Q |
15 |
gatgaaactgagatcatagaggcatcaagagtagccaatgctcatgacttcattgctagcttgaaagatgggtatgagacatggtgtggggacaaagggg |
114 |
Q |
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| T |
17870423 |
gatgaaactgagatcatagaggcatcaagagtagccaatgctcatgatttcattgcaagtttgaaagatgggtatgagacatggtgtggggacaaaggag |
17870324 |
T |
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| Q |
115 |
tgcaactttcagggggtcaaaaacaaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtg |
207 |
Q |
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| T |
17870323 |
tgcaactttcaggggggcaaaaacaaaggatagcaatagctagagccatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtg |
17870231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 2451070 - 2451226
Alignment:
| Q |
51 |
aatgctcatgacttcattgctagcttgaaagatgggtatgagacatggtgtggggacaaaggggtgcaactttcagggggtcaaaaacaaaggatagcaa |
150 |
Q |
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| T |
2451070 |
aatgctcatgattttatatcaagcttaaaatatggttatgagacattgtgtggtgatagaggagttcaactttctggtggtcaaaagcaaaggattgcaa |
2451169 |
T |
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| Q |
151 |
tagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtg |
207 |
Q |
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| T |
2451170 |
tagctagagctatattgaagaatccaaaggtgttgcttttggatgaagcaacaagtg |
2451226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 2592258 - 2592450
Alignment:
| Q |
15 |
gatgaaactgagatcatagaggcatcaagagtagccaatgctcatgacttcattgctagcttgaaagatgggtatgagacatggtgtggggacaaagggg |
114 |
Q |
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| T |
2592258 |
gatgaaagtgaaattatagaggcatcaaaggctgcaaatgctcatgatttcatatcaagcttaaaagatggttatgatacactgtgtggtgatagaggag |
2592357 |
T |
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| Q |
115 |
tgcaactttcagggggtcaaaaacaaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtg |
207 |
Q |
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| T |
2592358 |
ttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtg |
2592450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 2641191 - 2641035
Alignment:
| Q |
51 |
aatgctcatgacttcattgctagcttgaaagatgggtatgagacatggtgtggggacaaaggggtgcaactttcagggggtcaaaaacaaaggatagcaa |
150 |
Q |
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||||||||||| ||||| | ||||| ||||||| ||||| |||| |||||| || | ||| || |||||| || ||||||||||||||||| |||| |
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| T |
2641191 |
aatgctcatgatttcatatcaagcttacaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaaggattgcaa |
2641092 |
T |
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| Q |
151 |
tagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtg |
207 |
Q |
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||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||| |
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| T |
2641091 |
tagctagagctatattgaagaatccaaaggtgttacttttggatgaagcaacaagtg |
2641035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 2623817 - 2623994
Alignment:
| Q |
30 |
atagaggcatcaagagtagccaatgctcatgacttcattgctagcttgaaagatgggtatgagacatggtgtggggacaaaggggtgcaactttcagggg |
129 |
Q |
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||||||||||||| | || ||||||||||| ||||| | ||||| |||||||| ||||| |||| |||||| |||| ||| || |||||| || | |
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| T |
2623817 |
atagaggcatcaaaggctgcaaatgctcatgatttcatatcaagcttaaaagatggatatgacacattgtgtggtgacagaggagttcaacttagtggtg |
2623916 |
T |
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| Q |
130 |
gtcaaaaacaaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtg |
207 |
Q |
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| T |
2623917 |
gtcaaaaacaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtg |
2623994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 2440320 - 2440504
Alignment:
| Q |
23 |
tgagatcatagaggcatcaagagtagccaatgctcatgacttcattgctagcttgaaagatgggtatgagacatggtgtggggacaaaggggtgcaactt |
122 |
Q |
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|||||| ||||||||||||| | || |||||||| || ||||| | ||||| |||||||| ||||| ||| |||||| || | ||| || |||||| |
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| T |
2440320 |
tgagattatagaggcatcaaaggctgcaaatgctcacgatttcatatcaagcttaaaagatggttatgatacactgtgtggtgatagaggagttcaactt |
2440419 |
T |
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| Q |
123 |
tcagggggtcaaaaacaaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtg |
207 |
Q |
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| T |
2440420 |
agtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtg |
2440504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 2596563 - 2596379
Alignment:
| Q |
23 |
tgagatcatagaggcatcaagagtagccaatgctcatgacttcattgctagcttgaaagatgggtatgagacatggtgtggggacaaaggggtgcaactt |
122 |
Q |
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|||||| ||||||||||||| | || |||||||| || ||||| | ||||| |||||||| ||||| ||| |||||| || | ||| || |||||| |
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| T |
2596563 |
tgagattatagaggcatcaaaggctgcaaatgctcacgatttcatatcaagcttaaaagatggttatgatacactgtgtggtgatagaggagttcaactt |
2596464 |
T |
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| Q |
123 |
tcagggggtcaaaaacaaaggatagcaatagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtg |
207 |
Q |
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| T |
2596463 |
agtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtg |
2596379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 2672351 - 2672195
Alignment:
| Q |
51 |
aatgctcatgacttcattgctagcttgaaagatgggtatgagacatggtgtggggacaaaggggtgcaactttcagggggtcaaaaacaaaggatagcaa |
150 |
Q |
| |
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||||||||||| || || | ||||| |||||||| ||||| || | |||||| |||| ||| || |||||| || |||||||||||||| || |||| |
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| T |
2672351 |
aatgctcatgattttatatcaagcttaaaagatggttatgatactttgtgtggtgacagaggagttcaacttagtggtggtcaaaaacaaagaattgcaa |
2672252 |
T |
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| Q |
151 |
tagctagagctatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtg |
207 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||| |
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| T |
2672251 |
tagctagagctatattgaagaatccagaggtgttgcttttggatgaagcaacaagtg |
2672195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 72 - 207
Target Start/End: Complemental strand, 2568955 - 2568820
Alignment:
| Q |
72 |
agcttgaaagatgggtatgagacatggtgtggggacaaaggggtgcaactttcagggggtcaaaaacaaaggatagcaatagctagagctatgttgaaga |
171 |
Q |
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||||| |||||||| ||||| |||| |||||| || | ||| || |||||| || |||||||||||||| || ||||||||||||||||| ||||||| |
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| T |
2568955 |
agcttaaaagatggttatgatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaaga |
2568856 |
T |
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| Q |
172 |
atccaaaggtgttgcttctagatgaagcaacaagtg |
207 |
Q |
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||||| ||||||||||| | |||||||||||||||| |
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| T |
2568855 |
atccagaggtgttgcttttggatgaagcaacaagtg |
2568820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 39157673 - 39157765
Alignment:
| Q |
84 |
gggtatgagacatggtgtggggacaaaggggtgcaactttcagggggtcaaaaacaaaggatagcaatagctagagctatgttgaagaatcca |
176 |
Q |
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|||||||| |||| ||||| || | ||| ||||| || ||||| || || || ||||||||||||||||||||||| ||||||||||||||| |
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| T |
39157673 |
gggtatgatacatactgtggagaaagaggagtgcagctatcaggaggacagaagcaaaggatagcaatagctagagcaatgttgaagaatcca |
39157765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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