View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7970_high_1 (Length: 620)
Name: NF7970_high_1
Description: NF7970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7970_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 535; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 1877738 - 1878323
Alignment:
| Q |
1 |
tacaaaacttttaagatattttgtcaacaccatctcatcaaaattatagtattaaactaatcacatgactcaaaataatataataagaaagtcttttgag |
100 |
Q |
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| T |
1877738 |
tacaaaacttttaagatattttgtcaacaccatcttatcaaaattatagtattaaactaatcacatgactcaaaataatataataagaaagtcttctgag |
1877837 |
T |
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| Q |
101 |
tgtatcttaatttaagacaaccagcttttaactttcattttggtttttgattaaaaagatggtcaactcaaaaactcat------catcattaagaacat |
194 |
Q |
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| T |
1877838 |
tgtatcttaatttaagacaaccagcttttaactttcattttggtttttgattaaaaagatggtcaactcaaaaactcatcatcatcatcattaagaacat |
1877937 |
T |
|
| Q |
195 |
ataccatatattctgaatttcaacaaggtttgccattgttgtgtaaggtatagaacttaaaacacatagaaagatgacaagaagatggtccttttacatg |
294 |
Q |
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| T |
1877938 |
ataccatatattctgaatttcaacaaggtttgccattgttgtgtaaggtatagaacttaaaacacatagaaagatgacaagaagatggtccttttacatg |
1878037 |
T |
|
| Q |
295 |
gattttctaccaattgtggtgattgcaagcaatgaattcagtgatgtggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatg |
394 |
Q |
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| T |
1878038 |
gattttctaccaattgtggtgattgcaagcaatgaattcagtgacgtggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatg |
1878137 |
T |
|
| Q |
395 |
tttttgttgcctatgcttatgctgttggtacttctgttctccttcctatcacctttttcaagagacggtaggttagacaaaatcacggtaaacaaatgaa |
494 |
Q |
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| T |
1878138 |
tttttgttgcctatgcttatgctgttggtacttctgttctccttcctatcacctttttcaagagacggtaggttagacaaaatcacggtaaacgaatgaa |
1878237 |
T |
|
| Q |
495 |
attttggtaaaattaaaataacgatatcatcgtaattttgttaaactcactttgatttcaaacattatatttatgttgactaattt |
580 |
Q |
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| T |
1878238 |
attttggtaaaattaaaatatcgatatcatcgtaattttgttaaactcactttgattacaaacattatatttctgttgactaattt |
1878323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 204 - 481
Target Start/End: Original strand, 1883959 - 1884236
Alignment:
| Q |
204 |
attctgaatttcaacaaggtttgccattgttgtgtaaggtatagaacttaaaacacatagaaagatgacaagaagatggtccttttacatggattttcta |
303 |
Q |
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| T |
1883959 |
attctgaacttcaacaaggtttgtgattgttgtatataggataaaacttagaacacatagaaagatgacaagaaaacggtccttttacatggattttctg |
1884058 |
T |
|
| Q |
304 |
ccaattgtggtgattgcaagcaatgaattcagtgatgtggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttg |
403 |
Q |
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| T |
1884059 |
ccacctgttgtgattataggcaatgaatgtgttgacatggctttactgactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttg |
1884158 |
T |
|
| Q |
404 |
cctatgcttatgctgttggtacttctgttctccttcctatcacctttttcaagagacggtaggttagacaaaatcacg |
481 |
Q |
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| T |
1884159 |
cctatgcttatgctgttgcaacttcttttctccttcctatcactttttttagaagaaggtaagtttgacagaatcacg |
1884236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 341 - 452
Target Start/End: Original strand, 1890740 - 1890851
Alignment:
| Q |
341 |
tggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttcc |
440 |
Q |
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| T |
1890740 |
tggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcc |
1890839 |
T |
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| Q |
441 |
tatcaccttttt |
452 |
Q |
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| T |
1890840 |
tatcactttttt |
1890851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 262 - 434
Target Start/End: Original strand, 1910967 - 1911139
Alignment:
| Q |
262 |
agaaagatgacaagaagatggtccttttacatggattttctaccaattgtggtgattgcaagcaatgaattcagtgatgtggctttagtcattttataca |
361 |
Q |
| |
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| T |
1910967 |
agaaacatgacaagaagatggtccttgtacatggatgttctgccacctgctgtgattatatgctatgaatgtattgacatggctttactcactttgttca |
1911066 |
T |
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| Q |
362 |
aagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttct |
434 |
Q |
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| T |
1911067 |
aagcagctacacttcaagggatgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttct |
1911139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 260 - 446
Target Start/End: Original strand, 1895509 - 1895695
Alignment:
| Q |
260 |
atagaaagatgacaagaagatggtccttttacatggattttctaccaattgtggtgattgcaagcaatgaattcagtgatgtggctttagtcattttata |
359 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| || | |||||| | ||||| | | | ||| | ||| |||||||| ||| ||| | |
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| T |
1895509 |
atagaaacatgacaagaagatggtccttttacatggatgttttgccaattttagtgatcataggacaggaaactattgaaatggctttactcactttgtt |
1895608 |
T |
|
| Q |
360 |
caaagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttcctatcac |
446 |
Q |
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| T |
1895609 |
caaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttcctgtcac |
1895695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 262 - 423
Target Start/End: Original strand, 1901922 - 1902083
Alignment:
| Q |
262 |
agaaagatgacaagaagatggtccttttacatggattttctaccaattgtggtgattgcaagcaatgaattcagtgatgtggctttagtcattttataca |
361 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||| || | ||| |||||||||| | ||||||||| ||| |||||||| ||| ||| | || |
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| T |
1901922 |
agaaacatgacaagaagatggtcactttacatggatgttttgccacctgtggtgattataggcaatgaatgttctgacatggctttactcactttgttca |
1902021 |
T |
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| Q |
362 |
aagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggt |
423 |
Q |
| |
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| T |
1902022 |
aagctgtaacacttcaagggatgaacaaccatgtctttattgcttatgcttatgctgttggt |
1902083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 11549123 - 11549179
Alignment:
| Q |
262 |
agaaagatgacaagaagatggtccttttacatggattttctaccaattgtggtgatt |
318 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||||||| |||| |||||| |
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| T |
11549123 |
agaaagatgaaaagaagatggtctttttacatggattttctaccggttgtagtgatt |
11549179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 11537453 - 11537506
Alignment:
| Q |
265 |
aagatgacaagaagatggtccttttacatggattttctaccaattgtggtgatt |
318 |
Q |
| |
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||||||| ||||||||| || |||||||| |||||||||||| |||| |||||| |
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| T |
11537453 |
aagatgaaaagaagatgatctttttacatagattttctaccagttgtagtgatt |
11537506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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